Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_J02
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    40   3e-04
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    30   0.36 
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    30   0.36 
SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr...    28   1.4  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   2.5  
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    27   4.4  
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po...    27   4.4  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    26   7.6  

>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
 Frame = +1

Query: 220 PDFKPKTPFGQMPVLVIDGKQYAQSTAICRYLGRKYGLA-GANDEEAFEIDQNVEFLH 390
           P +   +P G+ P++V DG  Y +S AI  +L RKYG +   ++E+  E+++   ++H
Sbjct: 40  PAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYGPSFKPSEEDVAELEKYELWMH 97


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -1

Query: 249 TERSLWLEVRPVSGEHAVVFEVLASVGEQHTAALPRE 139
           T R L    R ++   +V  EV ASV EQ T +LPRE
Sbjct: 774 TSRELASSDRNINTGTSVASEVSASVSEQSTVSLPRE 810


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 369 VDLEGLLVIGPGEPVLAAEVPADGGA 292
           VD++GL    PG+P+     PADG A
Sbjct: 719 VDIDGLTTFAPGKPLTLVVHPADGSA 744


>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 169

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 370 QNVEFLHDIRAKAAAVYYEADEELKAKKHEDFSKNVY 480
           Q+V+FL + +  +  V YE ++ L AK   +   NVY
Sbjct: 65  QSVQFLKERQGDSFTVTYELNDTLNAKAEVEAKDNVY 101


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 6   SXTXLTIGNSLRFEFCFSNRTECPATYHYKLKMPKVVYHYFAC 134
           S T   I + L F FCF +  E      ++L   ++ Y  F C
Sbjct: 784 SFTDFEINSILNFFFCFLHTVEPSGKLTFELAFLEIFYELFNC 826


>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = +1

Query: 304 CRYLGRKYGLAGANDEEAFEIDQNVEFLHDIRAKAAAVYYEADEEL--KAKKHEDFSKNV 477
           C Y G KY + G ++   +E+      +  I     A  +  +E       ++++  + +
Sbjct: 112 CLYYGTKYAIEGISEALTWEMQSIGVKVKIIEPGFTATEFRVEEGAGKHYAEYDNLKQKL 171

Query: 478 YPDMLXKLNSIVEANK 525
           Y D+L KL +     K
Sbjct: 172 YEDLLPKLKTATPPQK 187


>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 236

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
 Frame = +1

Query: 304 CRYLGRKYGLAGANDEEAFEIDQNVEFLHDIRAKAAAVYYEADEEL--KAKKHEDFSKNV 477
           C Y G KY + G ++   +E+      +  I     A  +  +E       ++++  + +
Sbjct: 112 CLYYGTKYAIEGISEALTWEMQSIGVKVKIIEPGFTATEFRVEEGAGKHYAEYDNLKQKL 171

Query: 478 YPDMLXKLNSIVEANK 525
           Y D+L KL +     K
Sbjct: 172 YEDLLPKLKTATPPQK 187


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 445 AKKHE-DFSKNVYPDMLXKLNSIVEANKGH 531
           AK  E DF +   PD + KLN +  +N+ H
Sbjct: 400 AKSQEFDFFEAKIPDSIAKLNELTASNENH 429


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,040
Number of Sequences: 5004
Number of extensions: 44316
Number of successful extensions: 106
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)