Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_I18
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch...    28   2.0  
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po...    27   3.4  
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa...    27   3.4  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    27   4.5  

>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
 Frame = +2

Query: 437 MIRYIDEFGQTTTRMQ*KKCFICEICDAIALFVTIISCNKQVNNNNCIHFMF-QVQGEVW 613
           + R I E  +   R Q   C +CE CD  A +V ++      +    I     +V GE W
Sbjct: 46  LARGIREASKALDRRQAHLCVLCESCDQEA-YVKLVEALCAESETPLIKVADPKVLGE-W 103

Query: 614 EGFFCINESANARGXAVC 667
            G   ++   NAR    C
Sbjct: 104 AGLCVLDRDGNARKVVGC 121


>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 174 GNFFKDLEKMGQRVRDAVI 230
           GNF KDL ++G+ + D++I
Sbjct: 253 GNFVKDLSQLGRNLEDSII 271


>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
 Frame = +2

Query: 437 MIRYIDEFGQTTTRMQ*KKCFICEICDAIALFVTIISCNKQVNNNNCIHFMF-QVQGEVW 613
           + R I E  +   R Q   C +CE CD  A +V ++      +    +     ++ GE W
Sbjct: 49  LARGIREASKALDRRQAHLCVLCESCDQEA-YVKLVEALCAESQTPLVKVADPKILGE-W 106

Query: 614 EGFFCINESANARGXAVC 667
            G   ++   NAR    C
Sbjct: 107 AGLCVLDRDGNARKVVGC 124


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = -2

Query: 253  VSTAGAALMTASRTL*PIFSRSLKKLPGAAETEAVAKTIANTKTKIFENFILYFREIETQ 74
            V T+     TAS+ + P F  S+    G  ETE + + +   K K   + +  +RE    
Sbjct: 1580 VPTSPLKAPTASQLIIPNFDGSITNYSGEEETEWLQEEVNIMKIKELTSTVNKYREQLAM 1639

Query: 73   RTSCNE 56
              S NE
Sbjct: 1640 VQSLNE 1645


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,037
Number of Sequences: 5004
Number of extensions: 42322
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)