Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_I16
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...    73   6e-14
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...    73   6e-14

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 72.9 bits (171), Expect = 6e-14
 Identities = 55/135 (40%), Positives = 70/135 (51%)
 Frame = +3

Query: 231 PQGPDKARRIX*RAKQGYVCIQESVCEVGGRKXSIAKGXTYGKPQNHGC*TIETQXQTFN 410
           P  PDKARR+  +AKQGYV  +  V   GGRK  + KG TYGKP + G   ++ Q ++  
Sbjct: 42  PSRPDKARRLGYKAKQGYVIYRIRV-RRGGRKRPVPKGQTYGKPVHQGVNHLKYQ-RSAR 99

Query: 411 PLLKEXVGRXCRWVSXGVEAS*WVAQRIFIQVFPRLFLLGTRQXKAIRPES*DQLES*NA 590
              +E VGR C   +  V  S WV Q    + F    +L     KAIR +        N 
Sbjct: 100 CTAEERVGRYCS--NLRVLNSYWVNQDATYKFFE--VILVDPSHKAIRRDPRINWIV-NP 154

Query: 591 VHXHREMRGLTSAGR 635
           VH HRE RGLTS G+
Sbjct: 155 VHKHRESRGLTSIGK 169



 Score = 65.7 bits (153), Expect = 8e-12
 Identities = 33/70 (47%), Positives = 45/70 (64%)
 Frame = +2

Query: 107 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPXPTRAGQSPKNXLTG*TRVC 286
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA  P+R  ++ +          
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 287 LYSRIRVRSG 316
           +Y RIRVR G
Sbjct: 61  IY-RIRVRRG 69


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 72.9 bits (171), Expect = 6e-14
 Identities = 55/135 (40%), Positives = 70/135 (51%)
 Frame = +3

Query: 231 PQGPDKARRIX*RAKQGYVCIQESVCEVGGRKXSIAKGXTYGKPQNHGC*TIETQXQTFN 410
           P  PDKARR+  +AKQGYV  +  V   GGRK  + KG TYGKP + G   ++ Q ++  
Sbjct: 42  PSRPDKARRLGYKAKQGYVIYRIRV-RRGGRKRPVPKGQTYGKPVHQGVNHLKYQ-RSAR 99

Query: 411 PLLKEXVGRXCRWVSXGVEAS*WVAQRIFIQVFPRLFLLGTRQXKAIRPES*DQLES*NA 590
              +E VGR C   +  V  S WV Q    + F    +L     KAIR +        N 
Sbjct: 100 CTAEERVGRYCS--NLRVLNSYWVNQDATYKFFE--VILVDPSHKAIRRDPRINWIV-NP 154

Query: 591 VHXHREMRGLTSAGR 635
           VH HRE RGLTS G+
Sbjct: 155 VHKHRESRGLTSIGK 169



 Score = 65.7 bits (153), Expect = 8e-12
 Identities = 33/70 (47%), Positives = 45/70 (64%)
 Frame = +2

Query: 107 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPXPTRAGQSPKNXLTG*TRVC 286
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA  P+R  ++ +          
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 287 LYSRIRVRSG 316
           +Y RIRVR G
Sbjct: 61  IY-RIRVRRG 69



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = +1

Query: 463 LKPLNG--LHKESSYKYFQGYSSWEPVKXRPFVPNPKINWNREMLYIXIVRCXXXXXXXX 636
           L+ LN   ++++++YK+F+     +P   +    +P+INW    ++              
Sbjct: 113 LRVLNSYWVNQDATYKFFEVILV-DP-SHKAIRRDPRINWIVNPVHKHR-ESRGLTSIGK 169

Query: 637 XXRGLGKGHRYSQT 678
             RG+GKGHRY+ +
Sbjct: 170 KSRGIGKGHRYNNS 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,295,166
Number of Sequences: 5004
Number of extensions: 64811
Number of successful extensions: 141
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)