Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_I16
(893 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 65 6e-11
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 65 6e-11
09_06_0328 + 22365308-22365415,22365743-22366018,22366166-223664... 30 2.9
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 29 5.0
01_01_0277 + 2274383-2274465,2274889-2274955,2275040-2275110,227... 29 5.0
11_01_0361 + 2772193-2772334,2773457-2773587,2773872-2773985,277... 29 6.6
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 65.3 bits (152), Expect = 6e-11
Identities = 51/138 (36%), Positives = 69/138 (50%)
Frame = +3
Query: 222 LPXPQGPDKARRIX*RAKQGYVCIQESVCEVGGRKXSIAKGXTYGKPQNHGC*TIETQXQ 401
L P PDKARR+ +AKQGYV + V GGRK + KG YGKP++ G ++ Q +
Sbjct: 144 LTRPTRPDKARRLGYKAKQGYVVYRVRV-RRGGRKRPVPKGIVYGKPKHQGITQLKFQ-R 201
Query: 402 TFNPLLKEXVGRXCRWVSXGVEAS*WVAQRIFIQVFPRLFLLGTRQXKAIRPES*DQLES 581
+ +E GR + V S WV + + F +L AIR +
Sbjct: 202 NKRSVAEERAGR--KLGGLRVLNSYWVNEDSTYKYFE--IILVDVAHSAIRNDPRINWLC 257
Query: 582 *NAVHXHREMRGLTSAGR 635
VH HRE+RGLTSAG+
Sbjct: 258 -KPVHKHRELRGLTSAGK 274
Score = 62.1 bits (144), Expect = 6e-10
Identities = 31/69 (44%), Positives = 43/69 (62%)
Frame = +2
Query: 110 GAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPXPTRAGQSPKNXLTG*TRVCL 289
GAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R PTR ++ + +
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 166
Query: 290 YSRIRVRSG 316
Y R+RVR G
Sbjct: 167 Y-RVRVRRG 174
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 65.3 bits (152), Expect = 6e-11
Identities = 51/138 (36%), Positives = 69/138 (50%)
Frame = +3
Query: 222 LPXPQGPDKARRIX*RAKQGYVCIQESVCEVGGRKXSIAKGXTYGKPQNHGC*TIETQXQ 401
L P PDKARR+ +AKQGYV + V GGRK + KG YGKP++ G ++ Q +
Sbjct: 39 LTRPTRPDKARRLGYKAKQGYVVYRVRV-RRGGRKRPVPKGIVYGKPKHQGITQLKFQ-R 96
Query: 402 TFNPLLKEXVGRXCRWVSXGVEAS*WVAQRIFIQVFPRLFLLGTRQXKAIRPES*DQLES 581
+ +E GR + V S WV + + F +L AIR +
Sbjct: 97 NKRSVAEERAGR--KLGGLRVLNSYWVNEDSTYKYFE--IILVDVAHSAIRNDPRINWLC 152
Query: 582 *NAVHXHREMRGLTSAGR 635
VH HRE+RGLTSAG+
Sbjct: 153 -KPVHKHRELRGLTSAGK 169
Score = 64.1 bits (149), Expect = 1e-10
Identities = 32/70 (45%), Positives = 44/70 (62%)
Frame = +2
Query: 107 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPXPTRAGQSPKNXLTG*TRVC 286
MGAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R PTR ++ +
Sbjct: 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60
Query: 287 LYSRIRVRSG 316
+Y R+RVR G
Sbjct: 61 VY-RVRVRRG 69
>09_06_0328 +
22365308-22365415,22365743-22366018,22366166-22366417,
22366542-22366939,22367028-22368021,22368199-22368409,
22368515-22368749,22368874-22368996,22369190-22369310,
22369416-22369625
Length = 975
Score = 29.9 bits (64), Expect = 2.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 61 TVYCGTRETSATGC*DGCLQIYS 129
TV G A GC DGCLQ+Y+
Sbjct: 657 TVLAGNANFWAVGCEDGCLQVYT 679
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +3
Query: 267 RAKQGYVCIQESVCEVGGRKXSIAKGXTYGKPQNHGC*TIETQXQTFNP 413
R+ GYV + GGRK + KG Y KP++ G ++ Q P
Sbjct: 249 RSGTGYVVLP-CPSRRGGRKRPVHKGIVYSKPKHQGITQLKFQRNKRTP 296
>01_01_0277 +
2274383-2274465,2274889-2274955,2275040-2275110,
2275550-2275667,2275755-2275828,2276094-2276149,
2276237-2276320,2276422-2276509,2276602-2276679,
2276814-2276870,2277074-2277578
Length = 426
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 293 NTNIPLFSPLAYSSGFVRPLWAWERGAYESTDGTAIPSHA 174
+T++P++ P S V P+W R + + D T +PS A
Sbjct: 133 HTHVPVYIPRYTFSWLVEPMWQVIRFLHRAADLTLVPSVA 172
>11_01_0361 +
2772193-2772334,2773457-2773587,2773872-2773985,
2774303-2774459,2774577-2775000,2775238-2776030,
2776182-2776241,2776952-2777593
Length = 820
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -1
Query: 317 THFAHGFLNTNIPLFSPLAYSSGFVRPLWAWERGAYESTDGTAIPSHATKN 165
TH ++GF+ IP+ + + Y G + + +GA+ D AI A ++
Sbjct: 410 THPSYGFIPVPIPVGAAIPYHYGAIMQPMYYPQGAFMHCDSAAINKTAIQH 460
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,883,359
Number of Sequences: 37544
Number of extensions: 441747
Number of successful extensions: 849
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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