Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_I16
         (893 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...    81   1e-15
Z81532-3|CAC70088.2|  659|Caenorhabditis elegans Hypothetical pr...    29   4.5  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score = 81.0 bits (191), Expect = 1e-15
 Identities = 43/106 (40%), Positives = 63/106 (59%)
 Frame = +2

Query: 107 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPXPTRAGQSPKNXLTG*TRVC 286
           MGAY+Y+QE++RKK SD +R+LLR+R W YRQL+ +HR P PTR  ++ +          
Sbjct: 1   MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFV 60

Query: 287 LYSRIRVRSGWXQAFNC*GXHLWQAPKPWVLNN*NPXXNLQSIAEG 424
           +Y R+RVR G  +   C G   +  PK   +N      + Q++AEG
Sbjct: 61  VY-RVRVRRGNRKRPVCKG-QTYGKPKTHGVNELKNAKSKQAVAEG 104



 Score = 72.1 bits (169), Expect = 5e-13
 Identities = 55/138 (39%), Positives = 73/138 (52%)
 Frame = +3

Query: 222 LPXPQGPDKARRIX*RAKQGYVCIQESVCEVGGRKXSIAKGXTYGKPQNHGC*TIETQXQ 401
           +P P  P+KARR+  RAKQG+V  +  V   G RK  + KG TYGKP+ HG   ++   +
Sbjct: 39  VPRPTRPEKARRLGYRAKQGFVVYRVRVRR-GNRKRPVCKGQTYGKPKTHGVNELKNA-K 96

Query: 402 TFNPLLKEXVGRXCRWVSXGVEAS*WVAQRIFIQVFPRLFLLGTRQXKAIRPES*DQLES 581
           +   + +   GR  R  S  V  S WVA+    + F  + L+     KAIR     Q  +
Sbjct: 97  SKQAVAEGRAGR--RLGSLRVLNSYWVAEDSTYK-FYEVVLIDPFH-KAIRRNPDTQWIT 152

Query: 582 *NAVHXHREMRGLTSAGR 635
              VH HRE RGLTSAGR
Sbjct: 153 -KPVHKHREQRGLTSAGR 169



 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 643 RGLGKGHRYSQTKGXSRRAAW 705
           RGLGKG R+S T+G S+   W
Sbjct: 172 RGLGKGWRFSATRGGSQAKNW 192


>Z81532-3|CAC70088.2|  659|Caenorhabditis elegans Hypothetical
           protein F36F2.6 protein.
          Length = 659

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
 Frame = +1

Query: 106 DGCLQIYSGVV--*EKTER--CYAFFVACEGMAVPSVDSYAPRSXAHKGRTKPEEXANGL 273
           DGC+ ++SG+V   EK ER   Y        + VP V          +  T+    AN L
Sbjct: 357 DGCVIVFSGIVPMGEKLERTDIYRLCTQFGAVIVPDVTDDVTHVVGARYGTQKVYQANRL 416

Query: 274 NKGMFVFK--NPCA-KWVXASXQLLRVXLMASP 363
           NK +   +    C  KW+ A   L ++   ++P
Sbjct: 417 NKFVVTVQWVYACVEKWLKADENLFQLTKESTP 449


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,327,305
Number of Sequences: 27780
Number of extensions: 371016
Number of successful extensions: 742
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)