Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_I14
         (856 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988...    32   0.51 
12_02_1174 - 26696869-26698191                                         31   0.89 
02_04_0400 - 22608519-22608844,22609044-22609122                       31   1.2  
03_05_1153 + 30787574-30787608,30787982-30788089,30788651-307886...    29   3.6  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    29   6.2  

>05_05_0156 + 22792783-22793410,22797153-22797227,22797644-22798879,
            22798947-22799155,22799240-22800209,22800395-22800465
          Length = 1062

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -1

Query: 220  AVSIRVVVFGRINDVRAVVNRFVAVSLSVGHSQQSEDENHEEFHFYMITSYHRRK 56
            A  I  +++G ++D     ++F+ +S       QS+DEN +  H  +  +YH +K
Sbjct: 985  ACDIIRILYGEVHDHSPFDDKFLPLSFDAQIDSQSDDENDKSGHGRIKGNYHSKK 1039


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 19/82 (23%), Positives = 19/82 (23%)
 Frame = +2

Query: 581 PPXXXXXXXXXXPPPPXXXXXPXPXXPXXXXXXXXXXXXXXPXXXXXXXPXPPPXXXXFX 760
           PP          PPPP     P P  P              P       P PPP      
Sbjct: 142 PPVKPQPPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPPTRPPSV 201

Query: 761 XPXXXGXXXXXXPXXXXXPPPP 826
            P          P      PPP
Sbjct: 202 KPPVVQPKPQPPPTLPPPSPPP 223


>02_04_0400 - 22608519-22608844,22609044-22609122
          Length = 134

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/68 (27%), Positives = 19/68 (27%)
 Frame = -2

Query: 741 GGGXGXXXXXXXGXXXXXXXXXXXXXXGXXGXGXXXXXGGGGXXXXXXXXXXGGXXXPPX 562
           GGG G       G              G  G G     GGGG          GG   PP 
Sbjct: 38  GGGGGGGGGGGGGGGGGGGGGGGGGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGGYYPPW 97

Query: 561 XGGXXXXG 538
            GG    G
Sbjct: 98  NGGYYPPG 105


>03_05_1153 +
           30787574-30787608,30787982-30788089,30788651-30788689,
           30789181-30789184,30789496-30789580,30789609-30790321
          Length = 327

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 20/80 (25%), Positives = 20/80 (25%)
 Frame = +2

Query: 617 PPPPXXXXXPXPXXPXXXXXXXXXXXXXXPXXXXXXXPXPPPXXXXFXXPXXXGXXXXXX 796
           PPPP     P P  P              P       P PPP       P          
Sbjct: 172 PPPPPPAPEPEPEPPKKEEPQP-------PPPKEEEKPEPPPAVIIVEPPAPAPEPEPEP 224

Query: 797 PXXXXXPPPPXXXXXXXPXP 856
           P     PPPP       P P
Sbjct: 225 PKKEPPPPPPPKQEPCPPPP 244


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 20/85 (23%), Positives = 20/85 (23%), Gaps = 3/85 (3%)
 Frame = +2

Query: 581 PPXXXXXXXXXXPPPPXXXXXPXPXXP---XXXXXXXXXXXXXXPXXXXXXXPXPPPXXX 751
           PP          PPPP     P P  P                 P       P PPP   
Sbjct: 42  PPPQGAPPPFLAPPPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGV 101

Query: 752 XFXXPXXXGXXXXXXPXXXXXPPPP 826
               P          P     PPPP
Sbjct: 102 NSSQPPPPPPPPPSPPPSAPPPPPP 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,408,171
Number of Sequences: 37544
Number of extensions: 412553
Number of successful extensions: 1702
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)