Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_I09
         (1014 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.36 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.62 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   1.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.36
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 732  PPPPPPPP 755
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 912  PPXPPPPP 935
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 913  PPXPPPPP 936
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.8 bits (54), Expect = 0.62
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 717 PXKXXPPPPPPPPXXP 764
           P K  PPPPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 3.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 915 PXPPPPPP 938
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 23.0 bits (47), Expect = 4.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 912 PPXPPPPPP 938
           PP P PPPP
Sbjct: 338 PPKPAPPPP 346



 Score = 22.2 bits (45), Expect = 7.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 903 PXXPPXPPPPP 935
           P  P  PPPPP
Sbjct: 338 PPKPAPPPPPP 348


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 717  PXKXXPPPPPPPP 755
            P    P PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864



 Score = 23.4 bits (48), Expect = 3.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 915  PXPPPPPP 938
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 7.7
 Identities = 10/33 (30%), Positives = 10/33 (30%)
 Frame = +3

Query: 666 PPPXPRXXXXXXXXXPXPXKXXPPPPPPPPXXP 764
           P P P            P     PPP  PP  P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,715
Number of Sequences: 438
Number of extensions: 9270
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33741981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)