Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_I08
         (1084 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.069
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.16 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    31   0.37 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.65 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   6.0  
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    27   6.0  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 33.1 bits (72), Expect = 0.069
 Identities = 22/72 (30%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
 Frame = +3

Query: 441 PPPPPXIFXXXXPPPPXXG---GFVXXPPPXXXKXFXGGAPLXXKKKKXXKXPXPPPXKK 611
           PPPPP        PP   G     +  PPP       G  PL  + +     P PPP + 
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGR---SAPPPPPPRS 368

Query: 612 XXXXGXGXSPPP 647
                 G  PPP
Sbjct: 369 --APSTGRQPPP 378



 Score = 32.3 bits (70), Expect = 0.12
 Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
 Frame = +2

Query: 443 PPPPXXFLXXXXPPPXXGG---VCXXXPPPPXKXXXGGGXPXXKKKKKXKXPXPPPXKKX 613
           PPPP         PP   G        PPPP +    G  P   + +    P PPP +  
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGR--SAPPPPPPRSA 369

Query: 614 P 616
           P
Sbjct: 370 P 370



 Score = 31.1 bits (67), Expect = 0.28
 Identities = 16/54 (29%), Positives = 17/54 (31%)
 Frame = +3

Query: 441 PPPPPXIFXXXXPPPPXXGGFVXXPPPXXXKXFXGGAPLXXKKKKXXKXPXPPP 602
           PPPPP        P P  G     PPP       G  P      +    P  PP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392



 Score = 27.5 bits (58), Expect = 3.4
 Identities = 17/55 (30%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
 Frame = +2

Query: 443 PPPPXXFLXXXXPPPXXGGVCXXXPPPPXKXXXGGGXPXXKKKKK--XKXPXPPP 601
           PPPP        P P  G      PPPP      G  P      +     P PPP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPP-PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.16
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 446 PPPXXFLXXXXPPPXXGGVCXXXPPPP 526
           PPP   +    PPP   GV    PPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 29.5 bits (63), Expect = 0.85
 Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
 Frame = +1

Query: 442 PPPPPXFFXXXXPPPPXG-GGLFXXPPPXXKXXLXGG 549
           PPP P       PPPP G  G    PPP     +  G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +3

Query: 429 PXVXPPPPPXIFXXXXPPPPXXGGFVXXPPP 521
           P   PPP P I     PPPP  G     PPP
Sbjct: 748 PIPVPPPAP-IMGGPPPPPPPPGVAGAGPPP 777



 Score = 28.7 bits (61), Expect = 1.5
 Identities = 18/59 (30%), Positives = 19/59 (32%)
 Frame = +3

Query: 477 PPPPXXGGFVXXPPPXXXKXFXGGAPLXXKKKKXXKXPXPPPXKKXXXXGXGXSPPPXP 653
           PPPP     V  P P         AP+            PPP       G G  PPP P
Sbjct: 732 PPPPPPAVIVPTPAP---------APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 28.3 bits (60), Expect = 2.0
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +3

Query: 429 PXVXPPPPPXIFXXXXPPPPXXGGFVXXPPP 521
           P   P PPP       PPPP   G     PP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776



 Score = 28.3 bits (60), Expect = 2.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 408 APLFFXXPXVXPPPPPXIFXXXXPPPP 488
           AP+    P   PPPPP +     PPPP
Sbjct: 755 APIMGGPPP--PPPPPGVAGAGPPPPP 779



 Score = 27.1 bits (57), Expect = 4.6
 Identities = 16/46 (34%), Positives = 17/46 (36%)
 Frame = +2

Query: 410 PPFFXXPXGXXPPPPXXFLXXXXPPPXXGGVCXXXPPPPXKXXXGG 547
           PP      G  PPPP   +    PPP         PPPP     GG
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPP--------PPPPPPAVSAGG 789



 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +1

Query: 442 PPPPPXFFXXXXPPPPXGGGLFXXPPP 522
           P PPP       PPPP   G+    PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPP 776


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 20/69 (28%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
 Frame = +2

Query: 410 PPFFXXPXGXXPPPPXXFLXXXX--PPPXXGGVCXXXPPPPXKXXXGGGXPXXKKKKKXK 583
           PP    P    PPPP          PPP         PPPP     G   P      +  
Sbjct: 275 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 334

Query: 584 XPXPPPXKK 610
              PPP  K
Sbjct: 335 EHMPPPPFK 343



 Score = 30.3 bits (65), Expect = 0.49
 Identities = 19/66 (28%), Positives = 20/66 (30%), Gaps = 2/66 (3%)
 Frame = +2

Query: 410 PPFFXXPXGXXPPPPXXFLXXXX--PPPXXGGVCXXXPPPPXKXXXGGGXPXXKKKKKXK 583
           PP    P    PPPP          PPP         PPPP     G   P      +  
Sbjct: 210 PPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 269

Query: 584 XPXPPP 601
              PPP
Sbjct: 270 EHMPPP 275



 Score = 30.3 bits (65), Expect = 0.49
 Identities = 19/66 (28%), Positives = 20/66 (30%), Gaps = 2/66 (3%)
 Frame = +2

Query: 410 PPFFXXPXGXXPPPPXXFLXXXX--PPPXXGGVCXXXPPPPXKXXXGGGXPXXKKKKKXK 583
           PP    P    PPPP          PPP         PPPP     G   P      +  
Sbjct: 223 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 282

Query: 584 XPXPPP 601
              PPP
Sbjct: 283 EHMPPP 288



 Score = 30.3 bits (65), Expect = 0.49
 Identities = 19/66 (28%), Positives = 20/66 (30%), Gaps = 2/66 (3%)
 Frame = +2

Query: 410 PPFFXXPXGXXPPPPXXFLXXXX--PPPXXGGVCXXXPPPPXKXXXGGGXPXXKKKKKXK 583
           PP    P    PPPP          PPP         PPPP     G   P      +  
Sbjct: 236 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 295

Query: 584 XPXPPP 601
              PPP
Sbjct: 296 EHMPPP 301



 Score = 30.3 bits (65), Expect = 0.49
 Identities = 19/66 (28%), Positives = 20/66 (30%), Gaps = 2/66 (3%)
 Frame = +2

Query: 410 PPFFXXPXGXXPPPPXXFLXXXX--PPPXXGGVCXXXPPPPXKXXXGGGXPXXKKKKKXK 583
           PP    P    PPPP          PPP         PPPP     G   P      +  
Sbjct: 249 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG 308

Query: 584 XPXPPP 601
              PPP
Sbjct: 309 EHMPPP 314



 Score = 27.1 bits (57), Expect = 4.6
 Identities = 18/65 (27%), Positives = 19/65 (29%), Gaps = 2/65 (3%)
 Frame = +2

Query: 413 PFFXXPXGXXPPPPXXFLXXXX--PPPXXGGVCXXXPPPPXKXXXGGGXPXXKKKKKXKX 586
           P    P    PPPP          PPP         PPPP     G   P      +   
Sbjct: 198 PAHHEPGEHMPPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGE 257

Query: 587 PXPPP 601
             PPP
Sbjct: 258 HMPPP 262


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.65
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 441 PPPPPXIFXXXXPPPPXXGGFV 506
           PPPPP       PPPP   G+V
Sbjct: 12  PPPPPGFEPPSQPPPPPPPGYV 33


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 22/82 (26%), Positives = 23/82 (28%)
 Frame = +2

Query: 407  GPPFFXXPXGXXPPPPXXFLXXXXPPPXXGGVCXXXPPPPXKXXXGGGXPXXKKKKKXKX 586
            G P    P    PP P        P P         PP P       G P   K      
Sbjct: 1138 GAPPVPKPSVAAPPVPAPSGAPPVPKPSVAA-----PPVPAP---SSGIPPVPKPAAGVP 1189

Query: 587  PXPPPXKKXPXXXXXXXXPPXP 652
            P PPP +  P        PP P
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVP 1211


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +3

Query: 441  PPPPPXIFXXXXPPPPXXGGFVXXPPP 521
            PPPPP         PP   G    PPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 35  LNKGENSLLKXFFGFFSRAGF 97
           LN+ ENSLLK    FF  AG+
Sbjct: 213 LNRKENSLLKYMRAFFQVAGY 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,746,946
Number of Sequences: 5004
Number of extensions: 31031
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 569764052
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)