Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_I07
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    34   0.032
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.4  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 33.9 bits (74), Expect = 0.032
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +3

Query: 522 PPPPPXXXXXXXXPXGGGGXXXXXXPPPPP 611
           PPPPP        P G G       PPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342



 Score = 32.3 bits (70), Expect = 0.098
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +3

Query: 522 PPPPPXXXXXXXXPXGGGGXXXXXXPPPPP 611
           PPPPP        P  G G      PPPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341



 Score = 30.3 bits (65), Expect = 0.39
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 523 PPPPPXXXXXXXXXXGGGXXXXXXXPPPPP 612
           PPPPP          G G       PPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +1

Query: 523 PPPPPXXXXXXXXXXGGGXXXXXXXPPPPP 612
           PPPPP           G        PPPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = -3

Query: 652 PXPPPPXXXXXXXXGGGGGXXXXXXPPPP 566
           P PPPP          G G      PPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPP 340



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = -1

Query: 651 PXPPPPXXXXXXXXGGGGGXXXXXXPPPP 565
           P PPPP          G G      PPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPP 340


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +2

Query: 524 PPPPPXXXXXXXPXGGGGXXXXXXPPPPP 610
           PPP P       P    G      PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +3

Query: 522 PPPPPXXXXXXXXPXGGGGXXXXXXPPPPP 611
           PPPPP        P G  G      PPPPP
Sbjct: 761 PPPPPP-------PPGVAGAGPPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,712,571
Number of Sequences: 5004
Number of extensions: 24867
Number of successful extensions: 51
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)