Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_I04
(895 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1152 + 9170628-9171899 48 1e-05
11_01_0771 + 6453130-6454488 42 7e-04
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 41 0.001
11_02_0012 - 7346282-7347136,7347234-7347593 38 0.011
11_02_0011 - 7337618-7338496,7338596-7338991 37 0.019
11_01_0767 + 6438648-6438809,6439146-6440000 34 0.13
11_01_0750 - 6315126-6315896,6316371-6316784 34 0.18
11_02_0014 - 7352619-7352918,7353173-7353418 33 0.23
05_06_0044 - 25150322-25151260 30 2.2
>01_01_1152 + 9170628-9171899
Length = 423
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = +3
Query: 546 TAPKIAXDIINRGADXQTQGHIKTPVSEDKIDPATAVAMFNVIFFQGHWHVPFNASETXE 725
T P+ A + +N T+G I+ + + +D +T V + N + F+G W +PF+ S T
Sbjct: 154 TQPEQARERVNAFVSDATEGLIRDVLPPNSVDSSTVVVLANAVHFKGTWSLPFHPSATFH 213
Query: 726 KDFHV 740
FH+
Sbjct: 214 APFHL 218
>11_01_0771 + 6453130-6454488
Length = 452
Score = 41.9 bits (94), Expect = 7e-04
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = +3
Query: 573 INRGADXQTQGHIKTPVSEDKIDPATAVAMFNVIFFQGHWHVPFNASETXEKDFH 737
IN A T I + + P TAV + N I+F+G W PFN S+T K F+
Sbjct: 177 INAWARRATGKLITDVLPPRSVGPETAVVLGNAIYFKGKWDRPFNESDTERKPFY 231
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 41.1 bits (92), Expect = 0.001
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +3
Query: 573 INRGADXQTQGHIKTPVSEDKIDPATAVAMFNVIFFQGHWHVPFNASETXEKDFHV 740
+N + T G IK + +D T + + N ++F+G W F+AS+T + +FH+
Sbjct: 217 VNSWVEKVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEFHL 272
Score = 39.5 bits (88), Expect = 0.004
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +3
Query: 573 INRGADXQTQGHIKTPVSEDKIDPATAVAMFNVIFFQGHWHVPFNASETXEKDFHV 740
+N D T G IK + I+ T + + N ++F+G W F+ S+T + +FH+
Sbjct: 469 VNSWVDRVTSGLIKNIATPRSINHNTKLVLANALYFKGAWAEKFDVSKTEDGEFHL 524
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 37.9 bits (84), Expect = 0.011
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +3
Query: 552 PKIAXDIINRGADXQTQGHIKTPVSEDKIDPATAVAMFNVIFFQGHWHVPFNASETXEKD 731
PK + IN+ T I+ + + + TA+ + N I+F+G W PF T
Sbjct: 121 PKSSRKKINKWVSKATNKLIREILPDGSVHGGTALVLVNAIYFKGKWSNPFPRERTTTGK 180
Query: 732 FH 737
FH
Sbjct: 181 FH 182
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 37.1 bits (82), Expect = 0.019
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +3
Query: 552 PKIAXDIINRGADXQTQGHIKTPVSEDKIDPATAVAMFNVIFFQGHWHVPFNASETXEKD 731
PK + IN+ T I + + + TA+ + N I+F+G W PF S T
Sbjct: 133 PKRSRKKINKWVSKATNKLIPEILPDGSVHVDTALVLVNAIYFKGKWSNPFPRSSTTTGK 192
Query: 732 FH 737
FH
Sbjct: 193 FH 194
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 34.3 bits (75), Expect = 0.13
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +3
Query: 552 PKIAXDIINRGADXQTQGHIKTPVSEDKIDPATAVAMFNVIFFQGHWHVPFNASETXEKD 731
P A IN T+ I + + T + N I+F+G W PF+ S+T E++
Sbjct: 55 PVEARKEINAWVARATKNLITEVIKPESQSVDTRHVVGNAIYFKGEWLAPFDKSDTAERE 114
Query: 732 F 734
F
Sbjct: 115 F 115
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 33.9 bits (74), Expect = 0.18
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +3
Query: 552 PKIAXDIINRGADXQTQGHIKTPVSEDKIDPATAVAMFNVIFFQGHWHVPFNASETXEKD 731
P+ A D IN T+G + T + ID T + + + ++F+G W + T E+
Sbjct: 139 PEDAPDQINSWVKDSTKGTVTTLLPAGTIDQNTGLVLGSALYFRGRWLDRDDLRRTTEQK 198
Query: 732 FH 737
F+
Sbjct: 199 FY 200
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 33.5 bits (73), Expect = 0.23
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = +3
Query: 552 PKIAXDIINRGADXQTQGHIKTPVSEDKIDPATAVAMFNVIFFQGHWHVPFNASETXEKD 731
PK + IN T I + + + T + + N I+F+G W PF T
Sbjct: 83 PKKSRKKINEWVSKATNKLIPEILPDGSVHRLTTLVLVNAIYFKGKWSDPFPRESTTTGK 142
Query: 732 FH 737
FH
Sbjct: 143 FH 144
>05_06_0044 - 25150322-25151260
Length = 312
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 645 ATAVAMFNVIFFQGHWHVPFNASETXEKDFHVR*KND 755
+ +V + N ++F +W PF T E DFHV +D
Sbjct: 75 SASVFLANSLYFNAYWDHPFFPHLTEEGDFHVSPDHD 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,204,337
Number of Sequences: 37544
Number of extensions: 297260
Number of successful extensions: 581
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -