Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_H24
         (945 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    99   5e-22
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   3.8  
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    26   8.9  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   8.9  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    26   8.9  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score =   99 bits (238), Expect = 5e-22
 Identities = 45/69 (65%), Positives = 52/69 (75%)
 Frame = +1

Query: 328 ERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTV 507
           ERIPERVVHAKG+GAFG FE T DITKY+   +F  +GK+TP+  RFSTVGGE G+ DT 
Sbjct: 52  ERIPERVVHAKGSGAFGEFECTDDITKYTKHTMFSKVGKKTPMVARFSTVGGERGTPDTA 111

Query: 508 RDPPRFCCK 534
           RDP  F  K
Sbjct: 112 RDPRGFALK 120



 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 16/27 (59%), Positives = 22/27 (81%)
 Frame = +2

Query: 518 RGFAVKFYTDDGVWDLXGNXTPHFLYK 598
           RGFA+KFYTD+G++D+ GN TP F  +
Sbjct: 115 RGFALKFYTDEGIFDMVGNNTPVFFLR 141



 Score = 39.5 bits (88), Expect = 7e-04
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = +3

Query: 210 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDR 326
           TT +G P+    A   VGK GP LLQD + +D    FDR
Sbjct: 13  TTNTGCPIFNPMAAARVGKGGPVLLQDSHLIDVFQHFDR 51


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 517 EGHEQYQQIHSLHQLLRI*QQSVSFCL-WTQILWQHCTW 404
           E +E+Y+Q+  +         SV + + W Q+L+  CTW
Sbjct: 282 ENYEEYKQVDRIVAKHLNSDGSVEYLVKWKQLLYDFCTW 320



 Score = 25.8 bits (54), Expect = 8.9
 Identities = 12/27 (44%), Positives = 21/27 (77%)
 Frame = +2

Query: 446 GHRLLLDSQQLVERVDLLILFVTLRGF 526
           GHR+L+ SQ +V  +D+L  +++LRG+
Sbjct: 706 GHRVLIFSQ-MVRMLDILGDYLSLRGY 731


>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 153 LGLLKPFCMFPSYYAAFVV*YHGATHW 73
           LG+ +PF ++ +Y    V  YH  + W
Sbjct: 334 LGISRPFMVYSTYQQVLVETYHQLSKW 360


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 286 RMLTFLMKCHPLTGERIPERVVH 354
           + +TFL+   P  G RIP   VH
Sbjct: 123 KTVTFLLTAQPYNGPRIPNASVH 145


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 503 VSADPLSPPTVENLTAIGVLLPMDSNTL 420
           VS +P +    +NLTAIGV  P+D+N +
Sbjct: 142 VSINPYNFSAFQNLTAIGV--PLDANNV 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,450,648
Number of Sequences: 5004
Number of extensions: 65854
Number of successful extensions: 164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)