Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_H24
(945 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176... 85 8e-17
02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82... 85 8e-17
06_03_1479 + 30428488-30428502,30428619-30428715,30429627-304299... 84 2e-16
03_02_0875 + 12038365-12039329,12039417-12039593,12039651-120398... 32 0.58
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 1.8
01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399... 29 4.1
04_04_1265 - 32231511-32231813,32231906-32232024,32232511-322327... 29 5.4
01_07_0082 - 40965947-40967023 29 7.1
02_04_0496 + 23446039-23446964,23452755-23452845,23452946-234529... 28 9.4
01_06_0943 + 33204112-33204136,33204703-33205743,33205786-332059... 28 9.4
>03_01_0223 -
1766292-1766442,1767621-1767676,1767798-1767891,
1768004-1768071,1768441-1769585,1770072-1770168,
1770265-1770279
Length = 541
Score = 85.0 bits (201), Expect = 8e-17
Identities = 41/69 (59%), Positives = 49/69 (71%)
Frame = +1
Query: 328 ERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTV 507
ERIPERVVHA+GA A G+FEVTHDIT + A + G +TP+ VRFSTV E GS +T+
Sbjct: 57 ERIPERVVHARGASAKGFFEVTHDITHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETL 116
Query: 508 RDPPRFCCK 534
RDP F K
Sbjct: 117 RDPRGFAIK 125
Score = 40.3 bits (90), Expect = 0.002
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +2
Query: 518 RGFAVKFYTDDGVWDLXGNXTPHFLYK 598
RGFA+KFYT +G WDL GN P F +
Sbjct: 120 RGFAIKFYTREGNWDLVGNNFPVFFIR 146
Score = 39.5 bits (88), Expect = 0.004
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +3
Query: 210 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDR 326
+T SGAPV TVG GP LL+D + ++++++FDR
Sbjct: 18 STNSGAPVWNNNNSLTVGSRGPILLEDYHLVEKLANFDR 56
>02_01_0111 -
825369-825428,825778-826380,826467-827267,827716-827766
Length = 504
Score = 85.0 bits (201), Expect = 8e-17
Identities = 40/69 (57%), Positives = 48/69 (69%)
Frame = +1
Query: 328 ERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTV 507
ERIPERVVHA+GA A G+FE THD+T + A S G +TP+ VRFSTV E GS +T+
Sbjct: 69 ERIPERVVHARGASAKGFFECTHDVTDITCADFLRSPGAQTPVIVRFSTVIHERGSPETI 128
Query: 508 RDPPRFCCK 534
RDP F K
Sbjct: 129 RDPRGFAVK 137
Score = 40.7 bits (91), Expect = 0.002
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +2
Query: 518 RGFAVKFYTDDGVWDLXGNXTPHFLYK 598
RGFAVKFYT +G WDL GN P F +
Sbjct: 132 RGFAVKFYTREGNWDLLGNNFPVFFIR 158
Score = 35.9 bits (79), Expect = 0.047
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +3
Query: 210 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDR 326
TT +GAPV TVG GP LL+D + +++++ F R
Sbjct: 30 TTNAGAPVWNDNEALTVGPRGPILLEDYHLIEKVAHFAR 68
>06_03_1479 +
30428488-30428502,30428619-30428715,30429627-30429904,
30430256-30431032,30431254-30431343,30431538-30431605,
30431696-30431789,30431902-30431961
Length = 492
Score = 83.8 bits (198), Expect = 2e-16
Identities = 40/69 (57%), Positives = 49/69 (71%)
Frame = +1
Query: 328 ERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTV 507
ERIPERVVHA+GA A G+FEVTHDI+ + A + G +TP+ VRFSTV E GS +T+
Sbjct: 57 ERIPERVVHARGASAKGFFEVTHDISHLTCADFLRAPGVQTPVIVRFSTVVHERGSPETL 116
Query: 508 RDPPRFCCK 534
RDP F K
Sbjct: 117 RDPRGFAVK 125
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = +3
Query: 204 FITTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDR 326
F TT SGAPV + TVG+ GP LL+D + +++++ FDR
Sbjct: 16 FWTTNSGAPVWNNNSALTVGERGPILLEDYHLIEKLAQFDR 56
Score = 37.1 bits (82), Expect = 0.020
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +2
Query: 518 RGFAVKFYTDDGVWDLXGNXTPHFLYK 598
RGFAVKFYT +G +DL GN P F +
Sbjct: 120 RGFAVKFYTREGNFDLVGNNMPVFFIR 146
>03_02_0875 +
12038365-12039329,12039417-12039593,12039651-12039893,
12040045-12040124,12040242-12040508,12040599-12040710,
12040757-12041071,12041357-12041366
Length = 722
Score = 32.3 bits (70), Expect = 0.58
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 524 NLGGSRTVSADPLSPPTVENLTAIGVLLPMDSNT 423
N+GGS SA+PL PPT++ + PM NT
Sbjct: 689 NIGGSAVGSANPLRPPTLDIPSPRTCFFPMPRNT 722
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 30.7 bits (66), Expect = 1.8
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +2
Query: 758 GYSPAXPTXPPXLG-YGXPPXTPSLGXILHXRFPXPG--LKIPP 880
G P P PP LG YG P PS+G P PG +PP
Sbjct: 1080 GIPPLPPPLPPTLGDYGVAPPPPSIGAGAPPPPPPPGGITGVPP 1123
>01_07_0111 - 41137822-41138973,41139453-41139540,41139850-41139969,
41140165-41140211,41140796-41141029,41141305-41141505,
41141506-41143407,41144140-41145303,41145574-41145879
Length = 1737
Score = 29.5 bits (63), Expect = 4.1
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -3
Query: 130 YVPFLLCGVRCLIPRSDSLGAYRELNYPNLKEF 32
Y+P+L+C C + DSL A+ +L PNL+ F
Sbjct: 1034 YLPYLMCIRICNLATCDSLPAFGQL--PNLRHF 1064
>04_04_1265 -
32231511-32231813,32231906-32232024,32232511-32232721,
32232870-32232942,32233329-32233603,32233684-32233831,
32233906-32234143,32234325-32234457,32234852-32235045,
32235114-32235218,32235332-32236640
Length = 1035
Score = 29.1 bits (62), Expect = 5.4
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +1
Query: 292 LTFLMKCHPLTGERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFS 471
L +L KC L+G+R +VV + G GY ++++ + F S G+ FS
Sbjct: 464 LVWLYKCRVLSGKRHQNKVVQKR--GILGYLSASNELGDENLELPFVSFGEIAAATNNFS 521
>01_07_0082 - 40965947-40967023
Length = 358
Score = 28.7 bits (61), Expect = 7.1
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = +2
Query: 758 GYSPAXPTXPPXLGYGXPPXTPSLG 832
GY PA P PP GYG PP P G
Sbjct: 263 GY-PAQPP-PPQAGYGYPPPPPQAG 285
>02_04_0496 +
23446039-23446964,23452755-23452845,23452946-23452996,
23453080-23453206,23453390-23453425,23453443-23453473,
23453488-23453576,23454341-23454462,23455601-23455778,
23458343-23458470,23458592-23458658,23459167-23459272,
23459365-23459473,23459965-23460084,23460187-23460220,
23460471-23460547,23460640-23460692,23460847-23460898,
23461270-23461767
Length = 964
Score = 28.3 bits (60), Expect = 9.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 301 RKLTSCNKAGPFLPTVCIAVLIPTGAPDLVVMKPGES 191
R L SC GP PT C ++I P+L +PG++
Sbjct: 109 RCLLSC--CGPMDPTSCTVLVIDLAYPELWYCRPGDN 143
>01_06_0943 +
33204112-33204136,33204703-33205743,33205786-33205926,
33206205-33206245,33208250-33208346,33208599-33208836,
33208937-33209087,33209155-33209454
Length = 677
Score = 28.3 bits (60), Expect = 9.4
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 659 WWRGXXFWSMG*XSGN 612
WWRG FW+ G SG+
Sbjct: 191 WWRGNNFWTSGHWSGD 206
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,458,546
Number of Sequences: 37544
Number of extensions: 501049
Number of successful extensions: 1235
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2717819680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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