SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_H21
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   173   3e-44
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    89   1e-18
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    87   4e-18
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    74   2e-14
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    48   2e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    46   9e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    44   4e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    35   0.017
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    29   0.66 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.5  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    27   3.5  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    27   3.5  
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    27   3.5  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    27   3.5  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   6.1  
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    26   8.1  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  173 bits (421), Expect = 3e-44
 Identities = 96/167 (57%), Positives = 104/167 (62%), Gaps = 1/167 (0%)
 Frame = +3

Query: 249 PAIRGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 428
           P   G+MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVA
Sbjct: 38  PRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVA 97

Query: 429 PEEHPVLLTEAPLNPKANREKMTPDHVRNIQ-HARHVRRHPSRALAVRVRSYHRYRAGLR 605
           PEEHP LLTEAPLNPK+NREKMT          A +V      +L    R+         
Sbjct: 98  PEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDS-- 155

Query: 606 RRCLPHRTHLRRIRTPPTPSCVWTWAGRDLTDYLXXILXXRXXSFPT 746
              + H   +      P        AGRDLTDYL  IL  R  +F T
Sbjct: 156 GDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFST 202



 Score =  102 bits (244), Expect = 8e-23
 Identities = 47/52 (90%), Positives = 50/52 (96%)
 Frame = +1

Query: 499 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGEGVSHTVPIYEGYALP 654
           QI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSG+GV+HTVPIYEGYALP
Sbjct: 121 QIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALP 172



 Score = 77.8 bits (183), Expect = 2e-15
 Identities = 33/39 (84%), Positives = 36/39 (92%)
 Frame = +2

Query: 146 KLPRLVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 262
           ++  LV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G
Sbjct: 4   EIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHG 42


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 88.6 bits (210), Expect = 1e-18
 Identities = 59/153 (38%), Positives = 78/153 (50%), Gaps = 5/153 (3%)
 Frame = +3

Query: 264 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEH 440
           VM    QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L   PEEH
Sbjct: 47  VMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEH 106

Query: 441 PVLLTEAPLNPKANREKMTPDHVRNIQ-HARHVRRHPSRALAVRVRSYHRYRAGLRRRCL 617
           P+LLTE PL    N+EK+       +   A      P  AL    R+      G+   C 
Sbjct: 107 PLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASART-----TGIVLECG 161

Query: 618 PHRTHLRRIRTP-PTPSCVW--TWAGRDLTDYL 707
              TH   I      PS +      GRD+TDYL
Sbjct: 162 DGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYL 194



 Score = 71.3 bits (167), Expect = 2e-13
 Identities = 28/52 (53%), Positives = 43/52 (82%)
 Frame = +1

Query: 499 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGEGVSHTVPIYEGYALP 654
           +  +ET N PA+  ++Q VL+LYAS RTTGIVL+ G+G++H+VPIY+G+++P
Sbjct: 126 EYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIP 177



 Score = 52.4 bits (120), Expect = 8e-08
 Identities = 20/34 (58%), Positives = 27/34 (79%)
 Frame = +2

Query: 158 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 259
           + +DNGSG  KAGFAGDD P+ +FP+ VGR +H+
Sbjct: 12  ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHE 45


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 86.6 bits (205), Expect = 4e-18
 Identities = 34/70 (48%), Positives = 54/70 (77%)
 Frame = +3

Query: 285 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 464
           KD  VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P    +LLTE P
Sbjct: 50  KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109

Query: 465 LNPKANREKM 494
           +NP ANREKM
Sbjct: 110 MNPVANREKM 119



 Score = 66.9 bits (156), Expect = 4e-12
 Identities = 29/51 (56%), Positives = 39/51 (76%)
 Frame = +1

Query: 499 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGEGVSHTVPIYEGYAL 651
           + MFE +    +YVAIQAVLSLYA G ++G+V+DSG+GV+H VP+YE   L
Sbjct: 121 ETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVL 171



 Score = 45.6 bits (103), Expect = 9e-06
 Identities = 19/31 (61%), Positives = 24/31 (77%)
 Frame = +2

Query: 158 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 250
           +V+DNG+G  K G+A D+ PR  FPSIVGRP
Sbjct: 6   IVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
 Frame = +3

Query: 288 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 464
           D ++G++A  K     +L YPI HG + NWD ME+ W  + +  LR  PE+H  LLTE P
Sbjct: 73  DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132

Query: 465 LNPKANRE 488
           LNP  NRE
Sbjct: 133 LNPPENRE 140



 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 28/59 (47%), Positives = 41/59 (69%), Gaps = 8/59 (13%)
 Frame = +1

Query: 499 QIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGEGVSHTVPIYEGYAL 651
           +IMFE+FN   +Y+A+QAVL+L AS  +        TG V+DSG+GV+H +P+ EGY +
Sbjct: 144 EIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVI 202



 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 14/28 (50%), Positives = 23/28 (82%)
 Frame = +2

Query: 158 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 241
           +++DNG+G  K G+AG+DAP  VFP+++
Sbjct: 8   IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 21/54 (38%), Positives = 30/54 (55%)
 Frame = +3

Query: 330 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 491
           + +K  I +G V NWD    +W +    +L+  P EHP+L+TE   NP  NR K
Sbjct: 63  MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVK 116



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = +1

Query: 499 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGEGVSHTVPIYEGYAL 651
           + MFE+   PA Y+A Q   + +ASG+ T  ++D G   S    IY+G+ L
Sbjct: 119 ETMFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169



 Score = 35.1 bits (77), Expect = 0.013
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +2

Query: 158 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGRDGR--YGTEGLVRR*RGTEQK 322
           +V+D GS   + GF+G+D P+ V PS  G    +  DGR  +G E + +   G E K
Sbjct: 14  IVIDPGSKWTRIGFSGEDIPKCVLPSYCG----EFSDGRRLFGEEYIYKSNPGMEIK 66


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 45.6 bits (103), Expect = 9e-06
 Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
 Frame = +3

Query: 276 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 452
           + +  + VG++   + G  ++ + P E  +++NWD ME++  +TF  +L +   EHP+ +
Sbjct: 62  LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120

Query: 453 TEAPLNPKANREKMT 497
           TE   NP   R  MT
Sbjct: 121 TEPLANPTYVRSTMT 135



 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = +1

Query: 499 QIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGEGVSHTVPIYEG 642
           +++FE +N P++   I  + S Y + +  ++GIVL+ G   SH +P+  G
Sbjct: 136 ELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNG 185



 Score = 35.9 bits (79), Expect = 0.008
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +2

Query: 158 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 253
           LV+DNGS   +AG+ G+  P+ VF ++V R R
Sbjct: 27  LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
 Frame = +3

Query: 249 PAIRGVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 422
           P+  GV   +  ++ YV DE Q    I  + +K    +GI+ +W+     W      +L+
Sbjct: 37  PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96

Query: 423 VAPEEHPVLLTEAPLNPKANREKM 494
           V P E+ +++TE   NP++ R+++
Sbjct: 97  VNPTEYAMMITEPSWNPQSVRQQI 120



 Score = 35.1 bits (77), Expect = 0.013
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +2

Query: 146 KLPRLVVDNGSGMCKAGFAGDDAPRAVFPSIVG 244
           ++P LV+D GS   + G+AG+++P  + PS  G
Sbjct: 9   EIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 34.7 bits (76), Expect = 0.017
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 499 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGEGVSHTVPIYEG 642
           Q  FE    P   +A + ++ LYA G   G+V+D G   +   PI +G
Sbjct: 167 QFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDG 214



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 345 PIEHGIVTNWDDMEKIWHHTF 407
           PI+ G V +W+ ++  W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = +3

Query: 408 YNELRVAPEEHPVLLTEAPLNPKANRE-----KMTPDHVRNIQHARHVRRHPSRALAVRV 572
           Y++L +  +E  V  TE+  N  A R      K+T   +RN+ H+  + +     +A+R 
Sbjct: 182 YHDLHIEIDEEDVPSTESRGNLNARRPQSGLLKITVGSLRNVTHSAGISKQTEMIVAIRA 241

Query: 573 RSYHRYR 593
               R R
Sbjct: 242 EDLERAR 248


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = +2

Query: 440  PRPAH*GSPQPQGQQREDDPR-SCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPAKVS 616
            P+PA    P P   +    P+ S       PP T+P  P      P VP  +    AK  
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPT----AKAP 1237

Query: 617  PTPYPSTK 640
            P P PS++
Sbjct: 1238 PVPAPSSE 1245



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 530  PCTSPSKPCSRCTRPVVPPVSCWTPAKVSPTPYPSTK 640
            P T+P  P    T PV P  S   P+   P P PS++
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSE 1072


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +2

Query: 503 SCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPAKVSPTPYPSTKDTHSP 655
           SC+  ++ PP T  S   S    P VPP S   T   + PT   ST    SP
Sbjct: 171 SCTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSP 221



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 503 SCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPAKVSPTPYPSTKDTHS 652
           SC+  ++ PP T  S   S    P VPP S  + +   P    S+ DT+S
Sbjct: 114 SCTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNS 162



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +2

Query: 497 PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPAKVSPTPYPSTKDT 646
           P S S  ST PP  S S   +  +  +    SC T   + PT   +T  T
Sbjct: 361 PTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVT 410


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +2

Query: 461 SPQPQGQQREDDPRSCSKHSTRPPCTSPSKPCSRC-TRPVVPPVSCWTPAKVSPTPYPST 637
           SP    + R+  P+SC     R       +PCSRC  R  V   +  T  K++  P+PS 
Sbjct: 4   SPPALKKFRKRSPKSCLICRRRKVKCDRQQPCSRCKERNEVCTYADDTIDKMNVGPHPSH 63

Query: 638 KDTHS 652
            +  S
Sbjct: 64  SENAS 68


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = +2

Query: 572 PVVPPVSCWTPAKVSPTPYPSTKDTHSPHAILRLDLGRSRSHRLP 706
           PV+PPV  + P  + P  +    +   P+A+   D        +P
Sbjct: 235 PVLPPVEIYDPEDIKPADWVDEPEIPDPNAVKPDDWDEDAPRMIP 279


>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 551 PCSRCTRPVVPPVSCWTPAKVSPTPYPST 637
           P SR T+P+    S  +P +VSP   PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +3

Query: 567 RVRSYHRYRAGLRRRCLPHRTHLRR 641
           R RS HR+  G  RR  P+RTHL R
Sbjct: 142 RTRSNHRH--GSHRRHEPYRTHLSR 164


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -3

Query: 218  EEHHLLRNRPCTYRSHCLLPTAATSSSHILN*YSIIK*VTS 96
            E +H L  +   Y SH  L  +  SS  I+  YSII   TS
Sbjct: 896  ERYHFLEKQWTLYYSHSKLMFSPFSSQRIILLYSIINKETS 936


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 465 LNPKANREKMTPDHVRNIQH-ARHVRRHPSRALAVR 569
           ++PK N  K+    +R++QH +R+ R  P   L++R
Sbjct: 58  VDPKKNSLKIKISDIRDVQHTSRYFRSSPKIRLSLR 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,319,165
Number of Sequences: 5004
Number of extensions: 75107
Number of successful extensions: 281
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -