Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_H20
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890...   128   4e-30
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631...   125   4e-29
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615...   124   9e-29
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637...    36   0.031
01_07_0025 + 40565296-40565497,40565591-40566075                       29   6.2  

>07_03_1580 +
           27888275-27888360,27888755-27888871,27888964-27889045,
           27889710-27889821,27889958-27890071,27890163-27890326
          Length = 224

 Score =  128 bits (310), Expect = 4e-30
 Identities = 66/102 (64%), Positives = 75/102 (73%), Gaps = 3/102 (2%)
 Frame = +2

Query: 479 ADKKSKKPALIAKSSILLDVXPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINK 658
           A K S K     KSS+LLDV PWDDETDMK++E  VR+++MEGL WGASKLVPVGYGI K
Sbjct: 123 ASKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKK 182

Query: 659 LQIMCVIEDDKVSVD-LLTEKIQE--FEDFVQSVDIAAFNKI 775
           LQIM  I DD VSVD L+ E + E    +FVQS DI AFNKI
Sbjct: 183 LQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIVAFNKI 224



 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 21/50 (42%), Positives = 31/50 (62%)
 Frame = +1

Query: 142 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIAS 291
           L  L Q+L+ K+YVSG   S+ D++VF  V   P A  P+  RWY+ +A+
Sbjct: 14  LKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAA 63


>03_04_0016 +
           16461542-16461566,16462701-16462732,16463015-16463100,
           16463189-16463305,16463399-16463474,16463695-16463818,
           16464482-16464595,16464700-16464947
          Length = 273

 Score =  125 bits (302), Expect = 4e-29
 Identities = 65/105 (61%), Positives = 74/105 (70%), Gaps = 3/105 (2%)
 Frame = +2

Query: 470 KAYADKKSKKPALIAKSSILLDVXPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYG 649
           +A A K S K     KSS+LLDV PWDDETDM ++E  VR ++MEGLLWGASKLVPVGYG
Sbjct: 141 RAAAVKASGKKKESGKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYG 200

Query: 650 INKLQIMCVIEDDKVSVDLLTEK---IQEFEDFVQSVDIAAFNKI 775
           I KLQIM  I DD VSVD L E     +   +F+QS DI AFNKI
Sbjct: 201 IKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDIVAFNKI 245



 Score = 51.6 bits (118), Expect = 8e-07
 Identities = 22/50 (44%), Positives = 34/50 (68%)
 Frame = +1

Query: 142 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIAS 291
           L  L++YL  +SY+SGY  S+ D+ VF  +  APAA+  +V RWY+ I++
Sbjct: 33  LQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISA 82


>07_03_1260 -
           25260872-25261101,25261199-25261312,25261473-25261596,
           25261755-25261839,25261917-25262033,25262122-25262207
          Length = 251

 Score =  124 bits (299), Expect = 9e-29
 Identities = 64/105 (60%), Positives = 74/105 (70%), Gaps = 3/105 (2%)
 Frame = +2

Query: 470 KAYADKKSKKPALIAKSSILLDVXPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYG 649
           +A A K S K     KSS+LLDV PWDDETDM ++E  VR ++MEGLLWGASKLVPVGYG
Sbjct: 125 RAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYG 184

Query: 650 INKLQIMCVIEDDKVSVDLLTEK---IQEFEDFVQSVDIAAFNKI 775
           I KLQIM  I DD VSVD L E     +   +++QS DI AFNKI
Sbjct: 185 IKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDIVAFNKI 229



 Score = 44.8 bits (101), Expect = 9e-05
 Identities = 18/48 (37%), Positives = 29/48 (60%)
 Frame = +1

Query: 142 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI 285
           L  L++YL  +SY+SGY  S  D+ V+     AP+++  +V RW+  I
Sbjct: 14  LKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHI 61


>01_06_1167 -
           35062766-35062870,35063165-35063228,35063647-35063738,
           35064137-35064205,35064322-35064412,35064509-35064732,
           35065064-35065180,35065583-35065651,35066172-35066237,
           35066335-35066505,35066581-35066661,35067620-35067700
          Length = 409

 Score = 36.3 bits (80), Expect = 0.031
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
 Frame = +1

Query: 142 LNDLNQYLAEKSYV--SGYTPSQADVQVFEQV-------GKAPAANLPHVLRWYNQI 285
           L +LNQ L++KS +  +G+ PS AD+ VF  +       G+      PHVLRW + I
Sbjct: 76  LGNLNQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132


>01_07_0025 + 40565296-40565497,40565591-40566075
          Length = 228

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
 Frame = -1

Query: 376 CW----GGSRGFSTGGQWAGAPETMFCVQPKCMKQ 284
           CW    GGSR    GG W  + +    V P+C K+
Sbjct: 84  CWRRGGGGSRAGGGGGAWRASGKEKLVVAPRCGKR 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,967,975
Number of Sequences: 37544
Number of extensions: 417597
Number of successful extensions: 995
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)