Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_H15
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   4.6  
SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr 2|||M...    27   4.6  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    26   6.1  

>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 158 SPSVPRRDPRKTKRRHGKNDLHP 90
           SPS    DP K KR  G+  LHP
Sbjct: 136 SPSTKLDDPLKPKRGRGRPRLHP 158


>SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 214

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 286 ELRTNTRCSEGHRKILQ--RRFIHHFTDDLGQSQQSIMGYPLLDRSGVDARRVRSRRN 453
           E + N     G   ++Q  +R ++   + +GQ +  I G P  +R  V+  R+RS R+
Sbjct: 16  EEKLNDLSKSGENSVIQSCQRLLNEIDEVIGQMEIEITGIPTSERGLVNG-RIRSYRS 72


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 361 DDLGQSQQSIMGYPLLDRSGVDARRVRSRRNPHRWAW 471
           +DL  S+Q   GY + +     A+RV+   NPH  AW
Sbjct: 692 EDLEASRQMQAGYEVKEELD-PAQRVKPAPNPHVHAW 727


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,343,773
Number of Sequences: 5004
Number of extensions: 67400
Number of successful extensions: 159
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)