Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_H13
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3

Query: 384 APPVGKXXFSXPPXXXXGXNPPPXXPPP 467
           AP +G      PP    G  PPP  PPP
Sbjct: 755 APIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 384  APPVGKXXFSXPPXXXXGXNPPPXXPPPXXPP 479
            APPV       PP        PP  PP   PP
Sbjct: 1168 APPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199



 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +3

Query: 384  APPVGKXXFSXPPXXXXGXNPPPXXPPPXXPP 479
            APPV K   + PP       PP   P    PP
Sbjct: 1101 APPVPKPSVAVPPVPAPSGAPPVPKPSVAAPP 1132



 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +3

Query: 384  APPVGKXXFSXPPXXXXGXNPPPXXPPPXXPP 479
            APPV K   + PP       PP   P    PP
Sbjct: 1120 APPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151



 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +3

Query: 384  APPVGKXXFSXPPXXXXGXNPPPXXPPPXXPP 479
            APPV K   + PP       PP   P    PP
Sbjct: 1139 APPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170



 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 384  APPVGKXXFSXPPXXXXGXNPPPXXPPPXXPP 479
            APPV K     PP       PP   P    PP
Sbjct: 1197 APPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 416 PPXTPXGGXPPPXXXPPPXSP 478
           PP  P  G  PP   PPP  P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +2

Query: 416 PPXTPXGGXPPPXXXPPPXSPXXXP 490
           PP  P    PPP   PP   P   P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +2

Query: 416  PPXTPXGGXPPPXXXPPPXSPXXXP 490
            PP  P    PPP   P P  P   P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAP 1731


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,952,964
Number of Sequences: 5004
Number of extensions: 26674
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)