Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_H09
         (914 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal prote...    48   1e-05

>U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 33 protein.
          Length = 124

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 27/68 (39%), Positives = 35/68 (51%)
 Frame = +3

Query: 189 TKVLRKASKPRHGRLYAKAVFTGYKAWSTQPAREHRSPQGLKEQKTVMMQSFMLGKHCVY 368
           T V R+ S P  GRLY KA+FTG+K    +   EH S   L+         F  GK  VY
Sbjct: 4   TAVARRPSAPTTGRLYVKAIFTGFKR-GLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVY 62

Query: 369 VYRAKKRT 392
           +Y+A  +T
Sbjct: 63  LYKAHNKT 70



 Score = 37.1 bits (82), Expect = 0.017
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
 Frame = +1

Query: 214 SPATAGCTQRPYSQDIKRGLRNQHENTALLK--G*RSKRP**CSLLCWASIASMCTELRR 387
           +P T     +      KRGLR Q E+T+LLK  G  +K            +  +     +
Sbjct: 12  APTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKED--AGFYAGKRVVYLYKAHNK 69

Query: 388 GHQFPGVPVGKKNQLRAIWGKVTRPHGHSG 477
             +  G  V  +   RAIWGK+TRPHG++G
Sbjct: 70  TLK-TGHTVATRT--RAIWGKITRPHGNAG 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,508,382
Number of Sequences: 27780
Number of extensions: 271227
Number of successful extensions: 516
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)