Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_H02
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.16 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.37 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.6  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   8.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 16/48 (33%), Positives = 18/48 (37%)
 Frame = +3

Query: 663 SPXXPFXXPXXPXLXPXPGXXXYPXTXLQXSPPXPPPPXLXXXFSPPP 806
           SP  P      P   P P     P   +   PP PPPP +     PPP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 19/75 (25%), Positives = 22/75 (29%)
 Frame = +3

Query: 588 PPPXGGXXXXPXXTPXLGPKXXGXLSPXXPFXXPXXPXLXPXPGXXXYPXTXLQXSPPXP 767
           PPP  G    P  +P   P+    +S          P L P                P P
Sbjct: 257 PPPSNGTVSSPPNSP---PRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPP 313

Query: 768 PPPXLXXXFSPPPXG 812
           PPP        PP G
Sbjct: 314 PPPPSRRNRGKPPIG 328



 Score = 25.8 bits (54), Expect = 8.0
 Identities = 30/118 (25%), Positives = 30/118 (25%), Gaps = 5/118 (4%)
 Frame = +2

Query: 476 PFPPKXPXXGXFXXXKXYPXXXSKXPX*X--GXPXXXXXXPPXG--RGXXXPXXNPPLGP 643
           P PP  P           P   S  P       P      PP    R    P   PP  P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396

Query: 644 QXRWXPFPXFXXXX-TQXPKXGPXXRGXXLPXXXXPKXPPFXPPPXPXXXLFPPPXGP 814
                  P       T  P   P      LP    P  PP  PP  P      PP  P
Sbjct: 397 GRSAPALPPLGNASRTSTP---PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 756 PPXPPPPXLXXXFSPPP 806
           PP PPPP       PPP
Sbjct: 10  PPPPPPPGFEPPSQPPP 26


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 708 PXPGXXXYPXTXLQXSPPXPPPPXLXXXFSPP 803
           P  G    P   +Q S P PPPP     ++ P
Sbjct: 339 PFAGNQVMPTPQVQGSRPPPPPPMPAPIYNVP 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,384,554
Number of Sequences: 5004
Number of extensions: 13087
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)