Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_G23
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po...   107   2e-24
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    83   5e-17
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz...    28   2.0  
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    27   3.6  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    27   4.7  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    27   4.7  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    26   8.2  

>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score =  107 bits (258), Expect = 2e-24
 Identities = 56/114 (49%), Positives = 71/114 (62%)
 Frame = +3

Query: 414 SDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGGSVKDRIAYRMFLDAEXKGILK 593
           S  +  IG TPL++L+ L  + G  C + AK EF NPGGSVKDR AY +  DAE KG L 
Sbjct: 15  SGFIGAIGRTPLIRLNTLSNETG--CNILAKAEFQNPGGSVKDRAAYYVVRDAEKKGKLS 72

Query: 594 PGKSVIVXPTSGNTGIGLALAAAVRGYRCIIXLPXKMSDEKVNTLGXIGC*NNP 755
            G   IV  T+GNTGIGLA  A  RGY+C+I +P   S  K++TL  +G   +P
Sbjct: 73  RG-GTIVEGTAGNTGIGLAHIARARGYKCVIYMPNTQSQAKIDTLKFLGAEVHP 125


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 83.0 bits (196), Expect = 5e-17
 Identities = 51/147 (34%), Positives = 77/147 (52%), Gaps = 5/147 (3%)
 Frame = +3

Query: 315 DAKNGTSNSARKFFTLKDMPHIVRALDRNQKVHSDILN----VIGNTPLVKLSKLPKDEG 482
           D  +G +  A   + L+ +   +R       +  DI+N    +IGNT +V++  L +  G
Sbjct: 7   DLASGIAMGAVFMYLLRRLYESLRVKSSADSLEEDIVNGVEGLIGNTKMVRIKSLSQATG 66

Query: 483 LKCEMYAKCEFLNPGGSVKDRIAYRMFLDAEXKGILKPGKS-VIVXPTSGNTGIGLALAA 659
             C++ AK EFLNPG S KDR+A +M   AE  G L P +S  +   T+G+TGI +A+  
Sbjct: 67  --CDILAKAEFLNPGNSPKDRVALQMIRTAEENGDLVPYQSNAVYEGTAGSTGISIAMLC 124

Query: 660 AVRGYRCIIXLPXKMSDEKVNTLGXIG 740
              GY   I +P   S EK + L  +G
Sbjct: 125 CSLGYDSRIYMPSDQSKEKSDILELLG 151


>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 338

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 435 GNTPLVKLSKLPKDEGLKCEMYAKCEFLNPG 527
           G TP+  + +L K  G K E++AK E  N G
Sbjct: 14  GPTPITSMKRLSKTLGGKVEIFAKREDCNSG 44


>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = +3

Query: 291 NSNMSNHVDAKNGTSNSARKFFTLKDMPHIVRALDRNQKVHSDILNVIGNTPLVKLSKLP 470
           N + + H+  +  T+ +++K   L +  H V + +  +  + D+L       L+KL  LP
Sbjct: 77  NRHAAAHIPQR--TTKTSQKLVLLPEN-HAVNSFNEEESNYEDLLTPSDAYNLIKLENLP 133

Query: 471 KDE 479
           +D+
Sbjct: 134 RDK 136


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 288 INSNMSNHVDAKNGTSNSARKFFTLKDMP 374
           INSN+SN +D+ +  ++SA   F   D+P
Sbjct: 157 INSNISNSLDSVSQHNSSADSLFVNGDVP 185


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 291 NSNMSNHVDAKNGTSNSARKFFT 359
           N+N SN+ +  NGT  +A+ FFT
Sbjct: 321 NNNNSNNNNGNNGTVPNAKTFFT 343


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 456 LSKLPK--DEGLKCEMYAKCEFLNPGGSVKDRIAYR 557
           LS++ K  D GLK  + AK  + NP  +++D + YR
Sbjct: 332 LSEMDKGSDVGLKNCIRAKISYENPNKAMRDPVIYR 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,348,947
Number of Sequences: 5004
Number of extensions: 67056
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)