Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_G21
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.22 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.52 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.90 
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    26   8.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 744 PXPPPPPXXXXXXGRPPPP 800
           P PPPPP      G PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +3

Query: 744 PXPPPPPXXXXXXGRPPPPXXXXXXXGXXPP 836
           P P PPP        PPPP       G  PP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +3

Query: 744 PXPPPPPXXXXXXGRPPPPXXXXXXXGXXPP 836
           P P P P      G PPPP       G  PP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 744 PXPPPPPXXXXXXGRPPPP 800
           P PPPPP        PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +1

Query: 730 PXXXXPPPPXPXXXXXXXGGXPPP 801
           P    PPPP P       G  PPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPP 779


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 744 PXPPPPPXXXXXXGRPPPP 800
           P PPPPP       +PPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPP 27



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 744 PXPPPPPXXXXXXGRPPPP 800
           P PPPPP        PPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPP 28


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 16/59 (27%), Positives = 17/59 (28%)
 Frame = +1

Query: 370 KKKXTPPPGXXXXXXGGGXPXXXFFXXXXPPPPXXXXXXXGGGXXXXXXXXKKXPPPPP 546
           KK+  PPP       G             PPPP        G            PPPPP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 750 PPPPPXXXXXXGRPPPP 800
           PPPPP      GR PPP
Sbjct: 362 PPPPPRSAPSTGRQPPP 378


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 93  LTKMXTFXLGFXKGGXSPXQXPGGFWEKF 179
           L+++  F LG  +   +P +  G FW KF
Sbjct: 525 LSRIKNFNLGEKENVSAPAKFNGSFWSKF 553


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,999,586
Number of Sequences: 5004
Number of extensions: 27835
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)