Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_G19
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    29   0.91 
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    28   2.1  
SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.4  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    26   6.4  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   8.5  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   8.5  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    26   8.5  

>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 222 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 365
           ET   K S   K +K  +   + +++++  K NT++ A Q W+K  KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 189 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 305
           Q+++++V+  Y   A+    EYL+EK    I +  K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595


>SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 214

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 116 GKQSQSHLGAVVIFESESTNTSKNLRXSHXN 24
           G Q  +H GA+     ES  T +NLR S  N
Sbjct: 121 GYQKLAHGGAIATLLIESLETVRNLRSSQAN 151


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 623 WVLSSFRXWVVXGGHDLEVNSXXFQHGGK 537
           W LS+ +   V  GH+ ++ S  F H G+
Sbjct: 387 WDLSTQKVRYVFSGHEQDIYSLDFSHNGR 415


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -1

Query: 149 VRSQRTHGEDEGKQSQSHLGAVVIFESESTNTSKNLRXSHXN 24
           ++      E+ GKQ +S +       S +TN SKN+  +  N
Sbjct: 4   IKDSSVKDENPGKQEESSIAVESREMSTATNNSKNIETTSSN 45


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 426 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 518
           L+ K+D  A K+ DQ  H K+     +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = -2

Query: 325 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 146
           M F    ++   T   + +PF   R+  HL      S +T+ +Y+ +  T     ++++ 
Sbjct: 1   MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57

Query: 145 EASAHTARTKA 113
             +A  A T A
Sbjct: 58  NGAAKEAATAA 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,547
Number of Sequences: 5004
Number of extensions: 53576
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)