Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_G14
         (1058 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.86 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.86
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 690 PPXXXPPPPPP 722
           PP   PPPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 25.4 bits (53), Expect = 0.86
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 961 PPXPXPPXPPP 993
           PP P PP PPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 24.6 bits (51), Expect = 1.5
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +2

Query: 686 PPPPXXPXPPPPXGGXXKXK 745
           PP P  P PPP   G    K
Sbjct: 338 PPKPAPPPPPPSSSGPDSAK 357



 Score = 23.4 bits (48), Expect = 3.5
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 684 PPPPXXXPPPPPPXG 728
           PP P   PPPP   G
Sbjct: 338 PPKPAPPPPPPSSSG 352



 Score = 22.2 bits (45), Expect = 8.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 680 PPPPPPXXPXP 712
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 11/36 (30%), Positives = 12/36 (33%)
 Frame = +2

Query: 365 PKKXPPPPXXXKXPPXPPPXKGGSXPPXGGXXXKPP 472
           P   P P    + P    P      PP GG    PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 6.1
 Identities = 10/34 (29%), Positives = 13/34 (38%)
 Frame = +3

Query: 351 GXPXXPKKXPPPPFXXNXPPPPXQXKGGLXPPXG 452
           G P  P + PPP      PP     +  + P  G
Sbjct: 37  GSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASG 70



 Score = 22.2 bits (45), Expect = 8.0
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = +2

Query: 356 PLXPKKXPPPPXXXKXPPXPPPXKGGSXPP 445
           P  P++  PP      PP  PP    S  P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 8.0
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 684 PPPPXXXPPPPPPXG 728
           PP P   PPP  P G
Sbjct: 39  PPNPSQGPPPGGPPG 53


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 705  PPPPPPXGG 731
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.153    0.529 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 280,474
Number of Sequences: 438
Number of extensions: 14929
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 35306793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)