Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_G13
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.040
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    33   0.070
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.65 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.86 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   0.86 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.040
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +1

Query: 625 PPPXIPPXQTPXXLXXXPPXPPPFSXXXPPPPPP 726
           PPP      TP       P P P     PPPPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 33.1 bits (72), Expect = 0.053
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
 Frame = +1

Query: 625 PPPXIPPXQTPXXLXXXPPXPPP---FSXXXPPPPPP 726
           P P   P   P  +   PP PPP    +   PPPPPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 32.7 bits (71), Expect = 0.070
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +1

Query: 625 PPPXIPPXQTPXXLXXXPPXPPPFSXXXPPPPPP 726
           PPP  P    P       P PPP      PPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765



 Score = 31.1 bits (67), Expect = 0.21
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +1

Query: 625 PPPXIPPXQTPXXLXXXPPXPPPFSXXXPPPPP 723
           PP  I P   P  +   PP P       PPPPP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 32.7 bits (71), Expect = 0.070
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +1

Query: 628  PPXIPPXQTPXXLXXXPPXPPPFSXXXPPPPPP 726
            PP  P    P  +    P PPP S   PP  PP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPP 1722



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +1

Query: 625  PPPXIPPXQTPXXLXXXPPXPPPFSXXXPPPPPP 726
            P P  PP   P      PP  PP     P  PPP
Sbjct: 1705 PTPPPPPMSVP-----PPPSAPPMPAGPPSAPPP 1733



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
 Frame = +1

Query: 625  PPPXIPPXQTPXXLXXXPPXPPPFSXXXPP--PPPP 726
            PP    P   P  +   PP   P     PP  PPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +1

Query: 637 IPPXQTPXXLXXXPPXPPPFSXXXPPPPPP 726
           +PP   P      PP PP F     PPPPP
Sbjct: 4   LPPGNPPP-----PPPPPGFEPPSQPPPPP 28



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +1

Query: 628 PPXIPPXQTPXXLXXXPPXPPPFSXXXPPPPP 723
           PP  PP   P      PP  PP     PPPPP
Sbjct: 5   PPGNPPPPPPPP-GFEPPSQPP-----PPPPP 30


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 22/71 (30%), Positives = 23/71 (32%), Gaps = 2/71 (2%)
 Frame = -1

Query: 833 GGGXXFFXXXXXXPPPXPXXXXXXXXXXXXXXXXXXGGG-GGGXXXEKGGGXG-GXXXXX 660
           GGG   F      PPP P                   GG GGG    +GG  G G     
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246

Query: 659 XGVXXGGMXGG 627
            G   GG  GG
Sbjct: 247 FGGGLGGFGGG 257


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -1

Query: 725 GGGGGGXXXEKGGGXGGXXXXXXGVXXGGMXGG 627
           GG GGG    +GGG GG      G   GG  GG
Sbjct: 26  GGFGGGRGGARGGGRGGARGGRGG--RGGARGG 56


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
 Frame = +1

Query: 625 PPPXIP--PXQTPXXLXXXPPXPPPFSXXXPPPP 720
           PPP  P  P ++P      P   PP     PPPP
Sbjct: 172 PPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = +1

Query: 625 PPPXIPPXQTPXXLXXXPPXPPPFSXXXPPPPPP 726
           P P IPP  +P      P   PP     PPP  P
Sbjct: 145 PRPSIPPP-SPASAPPIPSKAPPIPSSLPPPAQP 177



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = +1

Query: 628 PPXIPPXQTPXXLXXXPPXPPPFSXXXPPPPP 723
           P  +PP   P      PP  P      PP PP
Sbjct: 168 PSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +1

Query: 631 PXIPPXQTPXXLXXXPPXPPPFSXXXPP 714
           P IPP  TP      P  PPP     PP
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPPTLPP 248



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +1

Query: 625 PPPXIPPXQTPXXLXXXPPXPPPFSXXXPPPPPP 726
           PPP   P   P         P  ++   PPPPPP
Sbjct: 167 PPPSFQP---PSAAAPATSLPSDYNPPPPPPPPP 197


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +1

Query: 628 PPXIPPXQTPXXLXXXPPXPPPFSXXXPPPPPP 726
           PP  PP   P      PP     +   PP PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 628 PPXIPPXQTPXXLXXXPPXPPPFSXXXPPPPP 723
           PP +PP   P      PP  P  +   PP PP
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +1

Query: 625 PPPXIPPXQTPXXLXXXPPXPPPFSXXXPPPPPP 726
           PPP  PP          PP         PPPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQ----GRSAPPPPPP 366



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +1

Query: 625 PPPXIPPXQTPXXLXXXPPXPPPFSXXXPPPPPP 726
           PP   PP   P      PP  PP      P  PP
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +1

Query: 628 PPXIPPXQTPXXLXXXPPXPPPFSXXXPPPPP 723
           PP +PP   P  L    P  PP     P  PP
Sbjct: 428 PPSLPP-SAPPSLPMGAPAAPPLPPSAPIAPP 458


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = +1

Query: 625  PPPXIPPXQTPXXLXXXPPXPPPFSXXXPPPPP 723
            P P +     P      PP P P +   P PPP
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPP 1194



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +1

Query: 625  PPPXIPPXQTPXXLXXXPPXPPPFSXXXPPPPP 723
            PP   PP  TP      PP P P +   P P P
Sbjct: 1212 PPSTAPPVPTPSA--GLPPVPVPTAKAPPVPAP 1242



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +1

Query: 625  PPPXIPPXQTPXXLXXXPPXPPPFSXXXPPPPPP 726
            PP   PP   P      PP PPP +   PP P P
Sbjct: 1193 PPSEAPPVPKPSV--GVPPVPPPST--APPVPTP 1222



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/34 (32%), Positives = 13/34 (38%)
 Frame = +1

Query: 625  PPPXIPPXQTPXXLXXXPPXPPPFSXXXPPPPPP 726
            PP  +P    P  +    P  P  S   P  PPP
Sbjct: 1032 PPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPP 1065


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,022,903
Number of Sequences: 5004
Number of extensions: 27896
Number of successful extensions: 210
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)