Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_G12
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   5.9  
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr...    26   5.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 791 PPPAPXXXXXXXPPPPP 841
           PPPAP       PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPP 768



 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 791 PPPAPXXXXXXXPPPPP 841
           PPP P       PPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPP 779



 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 791 PPPAPXXXXXXXPPPPP 841
           PPP P       PPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPP 780


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/71 (26%), Positives = 20/71 (28%)
 Frame = +3

Query: 594 APPXXPPPXNXKKKRXXXXSSAPPXXXXXXXXXRXXXXXXXXXXXPXXPPPXXGAXXGXF 773
           APP  PPP N          S+PP                     P  PPP         
Sbjct: 252 APPPIPPPSNGTV-------SSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAAL 304

Query: 774 PXXXAXPPPPP 806
                 PPPPP
Sbjct: 305 AANKKRPPPPP 315


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 791 PPPAPXXXXXXXPPPPP 841
           PPP P       PPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPP 28



 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 460 PPPPPPXFFXXXXPP 416
           PPPPPP F     PP
Sbjct: 11  PPPPPPGFEPPSQPP 25


>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 311

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 8   FITNSLIGEIPLKNLTH 58
           F   SL+G  PLKNLTH
Sbjct: 62  FSPTSLVGAQPLKNLTH 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,956,618
Number of Sequences: 5004
Number of extensions: 26269
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)