Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_G11
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    91   1e-19
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...    58   2e-09
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   4.8  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    26   6.4  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    26   8.4  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    26   8.4  

>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 15/155 (9%)
 Frame = +3

Query: 135 FQIVDAYERRNADSHRVIGTLLGT--SDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVY 308
           F I+D   R++ ++ RVIGTLLGT   D   +E+ +CF VPH E ++QVE E+ Y   +Y
Sbjct: 31  FSILDHSTRKSENNQRVIGTLLGTRSEDGREIEIKSCFAVPHNESSEQVEVEMEYHRAMY 90

Query: 309 ELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREP------------VHVTLDTS 452
            L+ + N  E +VGW+AT  ++   S++I   Y+    EP            VH+T++T 
Sbjct: 91  HLHLKANPREVVVGWYATSPDLDAFSALIQNLYASPA-EPGTAPLGTYPHPCVHLTVNTD 149

Query: 453 LAGGRMGLRAYVCVPLGVPNG-KQGCMFTPVDVTL 554
           ++   + ++ YV  P+G+       C F P   T+
Sbjct: 150 VS-SPLAIKTYVSSPVGITERLADSCAFVPTPFTI 183


>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
 Frame = +3

Query: 144 VDAYERR-NADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA---ELNYAMDVYE 311
           VD+Y R       RV+G LLG ++  VV V N + +P +E          + N+   + E
Sbjct: 28  VDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWFLDHNFMESMNE 87

Query: 312 LNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVC 491
           + +++N++E +VGW+ TG ++      I+    +    PV V +D       +   AY  
Sbjct: 88  MFKKINANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIIDVKPKSVGLPTNAYFA 147

Query: 492 V 494
           +
Sbjct: 148 I 148


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 153 YERRNADSHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVE 278
           Y+ R  DSHR I  L GT  +  +   +   + +K H  ++E
Sbjct: 483 YDHRLRDSHREIYQLQGTGYRPFLRANDNASINNKNHHKELE 524


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +2

Query: 527 HVHSCRCHSHV 559
           H+H CRCH+++
Sbjct: 69  HIHCCRCHTYI 79


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 211 SLVPNKVPITL*ESAFRRSYASTI*N-KTSRMDLYTNIESH 92
           S  P  +P T    +      ST+ N  TSRM  YT +ESH
Sbjct: 377 SPTPRHLPYTWSRHSTSGPSRSTVLNPSTSRMSNYTGLESH 417


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 164 KCRFSQSYRHLIGHERQRSGG-SNQLLLRATQRTCRSSRSGT*LRDGCL 307
           + R S SY   I  ++  SGG + + L  A  RTC  S + T L + CL
Sbjct: 201 RSRSSSSYS--INKKKGTSGGQATRHLTYALSRTCSQSSNTTSLLESCL 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,062,328
Number of Sequences: 5004
Number of extensions: 61025
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)