Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_G10
         (941 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.95 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.8  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   8.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 16/59 (27%), Positives = 17/59 (28%)
 Frame = +3

Query: 426 PPRWXXGXXLGAPFPVPQKXXPGXXGNXGXXGXPPXPXGTTXXPQNPXXAPKNPXFPKG 602
           PP          P P P    P    +      P  P G    P  P  AP  P  P G
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAG 462



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 32/153 (20%), Positives = 41/153 (26%), Gaps = 16/153 (10%)
 Frame = +2

Query: 521 VPPPPXGDNXXPPKPXXGPKKPXFPQRAXPXXDHXKRXPFXXXFAKT------------- 661
           +PPP  G    PP     P +P  P    P  +   + P     ++              
Sbjct: 256 IPPPSNGTVSSPPN---SPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPP 312

Query: 662 --PPPXKXXQKXPPXXXGGXNNXRGRPXXPXPXYXXXXXXXXXXXXPXPPXXSPR-XXSX 832
             PPP +  +  PP   G  N+    P  P                  PP   PR   S 
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPST 372

Query: 833 XXXXXXXXXXXXPXXPPXPPFPPPXXXXXPKPP 931
                          PP PP   P       PP
Sbjct: 373 GRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPP 405



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 31/140 (22%), Positives = 38/140 (27%), Gaps = 3/140 (2%)
 Frame = +2

Query: 521 VPPPPXGDNXXPPKPXXGPKKPXFPQRAXPXXDHXKRXPFXXXFAKTPPPXKXXQKXPPX 700
           +P PP G +  PP P   P+      R  P     +           PPP    +  P  
Sbjct: 351 IPLPPQGRSAPPPPP---PRSAPSTGRQPPPLSSSR----AVSNPPAPPPAIPGRSAPAL 403

Query: 701 XXGGXNNXRGRPXXPXPXYXXXXXXXXXXXXPXPPXXSPRXXSXXXXXXXXXXXXXPXXP 880
              G  +    P  P P              P  P  +P                 P  P
Sbjct: 404 PPLGNASRTSTPPVPTP------PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAP 457

Query: 881 PXP---PFPPPXXXXXPKPP 931
           P P   P  PP     P PP
Sbjct: 458 PLPAGMPAAPPLPPAAPAPP 477


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 869 PXXPPXPPFPPPXXXXXPKPP 931
           P  PP P F PP     P PP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 609 GXALWGKXGFLGPXXGFGGXXLSPXGGG 526
           G +  G+ GF G   GFGG      GGG
Sbjct: 12  GGSRGGRGGFNGGRGGFGGGRGGARGGG 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,140,414
Number of Sequences: 5004
Number of extensions: 28828
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)