Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_G05
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    27   3.7  
SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ...    26   6.5  

>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/64 (23%), Positives = 28/64 (43%)
 Frame = +2

Query: 530 GMTLNSTLEFSLISFXRRPSGVAADHPTIADTSIYASMSSILAVGWDISSFQTFKDGLKI 709
           G++  +   F L  F      V   +   A  + Y  ++ +LA  W+++S  TF   +  
Sbjct: 97  GLSAFAFTTFLLSLFNVNAGHVKVSNMVTAPAAFYGGLAQLLASMWEMASGNTFGGAVFG 156

Query: 710 AYYC 721
           +Y C
Sbjct: 157 SYGC 160


>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 340 TMR*LYFPIEQSYYRPSVGYTMLWGLVLRNFLA 242
           T R +  P++ S Y  + GYT  W   +  F+A
Sbjct: 211 THRNMKMPLQHSIYSINEGYTAFWDEKIARFIA 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,520,942
Number of Sequences: 5004
Number of extensions: 73610
Number of successful extensions: 170
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)