Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_G03
         (934 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce...    49   8e-07
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.6  
SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces pombe...    26   8.7  

>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 56

 Score = 49.2 bits (112), Expect = 8e-07
 Identities = 18/31 (58%), Positives = 22/31 (70%)
 Frame = +2

Query: 125 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLI 217
           M H N+W+SHPR+YG+GSR C     R GLI
Sbjct: 1   MAHENVWFSHPRKYGKGSRQCAHTGRRLGLI 31



 Score = 42.3 bits (95), Expect = 9e-05
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = +3

Query: 219 RKYGLNICRQCFREYAHDIGF 281
           RKYGLNI RQ FREYA+DIGF
Sbjct: 32  RKYGLNISRQSFREYANDIGF 52


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +3

Query: 426 PXXPPPPXXGGXXGPPXXXXXXXXXXXPPP 515
           P  PP P  GG   PP           PPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 139

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +2

Query: 179 RSCRSCSNRHGLIPQVRFEHMQTVLQRV 262
           RS R C NR   +PQ+RFEH +  L+RV
Sbjct: 15  RSAR-CMNR---MPQLRFEHTKGDLKRV 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,793,159
Number of Sequences: 5004
Number of extensions: 29706
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)