Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_G02
         (975 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.009
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    36   0.011
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    35   0.020
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   0.13 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.75 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.9 bits (79), Expect = 0.009
 Identities = 16/51 (31%), Positives = 18/51 (35%)
 Frame = +2

Query: 701 PPPPPXXXXXXXXXPXFLXLXXXXXXXXXPPPXXPPXXXPXXXPPXPXXPP 853
           PPPPP         P  + +         PPP  PP       PP P  PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 33.1 bits (72), Expect = 0.061
 Identities = 23/63 (36%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
 Frame = +2

Query: 788 PPPXXPPXXXPXXXP-PXPXXPPXPXXXXXXXRGXXPXXPXXXXGGXXXPPPPPXXXXXP 964
           PPP  P    P   P P P  PP P        G  P  P     G   PPPPP     P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMG-----GPPPPPPPPGVAGAG-PPPPP-----P 780

Query: 965 XPP 973
            PP
Sbjct: 781 PPP 783



 Score = 29.9 bits (64), Expect = 0.57
 Identities = 14/51 (27%), Positives = 16/51 (31%)
 Frame = +1

Query: 700 PPPXPPXXXXXXXSSXLPSXXXXXXXPXXPXPXXPPXXXXXXXPXPPPXXP 852
           PPP P         + +P           P P  PP       P PPP  P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 15/47 (31%), Positives = 15/47 (31%)
 Frame = +1

Query: 835 PPPXXPPXXXXXXXXXGXPXXXXXXXXGGGXXPPPPXPXXXXPXPPP 975
           PPP  P            P        GG   PPPP P      PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPP-PPPPPPGVAGAGPPP 777


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 35.5 bits (78), Expect = 0.011
 Identities = 24/95 (25%), Positives = 25/95 (26%), Gaps = 2/95 (2%)
 Frame = +2

Query: 695 PXPPPPPXXXXXXXXX--PXFLXLXXXXXXXXXPPPXXPPXXXPXXXPPXPXXPPXPXXX 868
           P PPPPP           P              PP   P    P   PP P  P  P   
Sbjct: 191 PPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPPTLPPQS 250

Query: 869 XXXXRGXXPXXPXXXXGGXXXPPPPPXXXXXPXPP 973
               +   P       G     PPPP     P  P
Sbjct: 251 TNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPRP 285



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 22/95 (23%), Positives = 23/95 (24%), Gaps = 4/95 (4%)
 Frame = +1

Query: 700 PPPXPPXXXXXXXSSXLPSXXXXXXXPXXPX--PXXPPXXXXXXXPXPPPXXP--PXXXX 867
           PPP PP        +  P           P   P   P         PPP  P  P    
Sbjct: 192 PPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPPTLPPQST 251

Query: 868 XXXXXGXPXXXXXXXXGGGXXPPPPXPXXXXPXPP 972
                  P             PPPP      P PP
Sbjct: 252 NTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPRPP 286


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 34.7 bits (76), Expect = 0.020
 Identities = 36/150 (24%), Positives = 38/150 (25%), Gaps = 8/150 (5%)
 Frame = +2

Query: 548 PPPPPXGXXXXXFFFFFSXXXXXXXXFPPPPXKXXXFFXFFFFXXGGGXPXPPPPPXXXX 727
           PPPPP            +         PPPP +            G   P PPPPP    
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAP-PPPPPRSAP 370

Query: 728 XXXXXPXFLXLXXXXXXXXXPPPXXPPXXXPXXXP-------PXPXXPPXPXXXXXXXRG 886
                P  L           PPP  P    P   P         P  P  P         
Sbjct: 371 STGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPS 430

Query: 887 XXP-XXPXXXXGGXXXPPPPPXXXXXPXPP 973
             P   P    G    PP PP     P  P
Sbjct: 431 LPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 23/88 (26%), Positives = 24/88 (27%), Gaps = 4/88 (4%)
 Frame = +2

Query: 695 PXPPPPPXXXXXXXXXPXFLXLXXXXXXXXXPPPXXPPXXXPXXXPPXP----XXPPXPX 862
           P PPPPP              +         PPP  PP        P P      PP P 
Sbjct: 311 PPPPPPPSRRNRGKP-----PIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365

Query: 863 XXXXXXRGXXPXXPXXXXGGXXXPPPPP 946
                  G  P  P         PP PP
Sbjct: 366 PRSAPSTGRQP-PPLSSSRAVSNPPAPP 392


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect(2) = 0.13
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 788 PPPXXPPXXXPXXXPPXPXXP 850
           PPP  PP   P   PP P  P
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 22.6 bits (46), Expect(2) = 0.13
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 686 GGXPXPPPPP 715
           G  P PPPPP
Sbjct: 7   GNPPPPPPPP 16


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.75
 Identities = 30/97 (30%), Positives = 30/97 (30%), Gaps = 1/97 (1%)
 Frame = -1

Query: 975 GGGXGXXXXXGGGGGXXXPPXXXXGXXGXXPRXXXXXXXGXGGXXGXGGXXXGXXXG-GX 799
           GGG G     G GGG   PP    G  G             GG  G GG   G   G G 
Sbjct: 187 GGGFG-----GFGGGSGGPPPGPGGFGGFG--GFGGEGHHHGGHGGFGGGPGGFEGGPGG 239

Query: 798 XGGGXXXXXXXXXXXRKXGXXXXXXXXXGGGGGXGXP 688
            GGG              G         GG GG G P
Sbjct: 240 FGGGPGGFGGGL-----GGFGGGPGGFGGGPGGHGGP 271


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 18/65 (27%), Positives = 18/65 (27%)
 Frame = +1

Query: 778  PXXPXPXXPPXXXXXXXPXPPPXXPPXXXXXXXXXGXPXXXXXXXXGGGXXPPPPXPXXX 957
            P  P    PP       P PP   PP         G P             PPPP P   
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPP-----------SAPPPPLPASS 1739

Query: 958  XPXPP 972
             P  P
Sbjct: 1740 APSVP 1744


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,479,756
Number of Sequences: 5004
Number of extensions: 43626
Number of successful extensions: 233
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)