Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_F17
(888 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 77 3e-15
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch... 42 9e-05
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 36 0.008
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 36 0.008
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy... 36 0.010
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch... 34 0.031
SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo... 33 0.054
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces... 26 8.2
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 77.4 bits (182), Expect = 3e-15
Identities = 38/76 (50%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Frame = +3
Query: 162 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKN-SKTADREEKRT 338
KM +N+ + V +D RTF+G AFD MNL+L DC+E+R IK +N + EEKR
Sbjct: 5 KMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKRM 64
Query: 339 LGFVLLRGENIVSLTI 386
LG V+LRGE IVSL++
Sbjct: 65 LGLVILRGEFIVSLSV 80
>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 94
Score = 42.3 bits (95), Expect = 9e-05
Identities = 27/62 (43%), Positives = 33/62 (53%)
Frame = +3
Query: 186 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGE 365
RV+VI D R +G+ K FD NLIL D F +I S + E LG LLRGE
Sbjct: 10 RVQVITNDGRVVLGSLKGFDHTTNLILSD--SFERIISMDQDM----ETIPLGVYLLRGE 63
Query: 366 NI 371
N+
Sbjct: 64 NV 65
>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 35.9 bits (79), Expect = 0.008
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +3
Query: 189 VRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEK---RTLGFVLLR 359
V V L+ R G A+D+H+N++LGD EE I D+ K + + +R
Sbjct: 22 VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVR 81
Query: 360 GENIV 374
G++++
Sbjct: 82 GDSVI 86
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 35.9 bits (79), Expect = 0.008
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +3
Query: 165 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 344
+ ++ + R++ R G K FD+ MNL+L D EE + T R LG
Sbjct: 28 LSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTG---AIRKLG 84
Query: 345 FVLLRGENIV 374
V++RG +V
Sbjct: 85 LVVVRGTTLV 94
>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 84
Score = 35.5 bits (78), Expect = 0.010
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = +3
Query: 165 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 344
+QQH + + Q G + FD+ MN++L D + + +KN+ KR LG
Sbjct: 20 LQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQ---VDAKNN-------KRELG 69
Query: 345 FVLLRGENI 371
+LL+G+NI
Sbjct: 70 RILLKGDNI 78
>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 80
Score = 33.9 bits (74), Expect = 0.031
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +3
Query: 141 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 320
MTI + + I + VI++ R F GT FD ++N++L D E+ + K ++
Sbjct: 3 MTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSE 62
>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
Smd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 115
Score = 33.1 bits (72), Expect = 0.054
Identities = 19/84 (22%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Frame = +3
Query: 138 KMTIGKNNKMQQHINYRVRVIL--QDSRTFIGTFKAFDKHMNLILGDCEEF---RKIKSK 302
+ + G + +QQ + +V++ ++++ + KAFD+H N++L + +E +K +
Sbjct: 24 EFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTAS 83
Query: 303 NSKTADREEKRTLGFVLLRGENIV 374
K + R + + LRG+ +V
Sbjct: 84 GKKGKAINKDRFISKMFLRGDGVV 107
>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +3
Query: 186 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFV 350
+V +QD ++ FK+ K + E F++I NS D+ + FV
Sbjct: 231 KVITSIQDLEDYMVVFKSLIKSREQKVKQFEHFQQIVQSNSNNPDQSSRSDPNFV 285
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,852,971
Number of Sequences: 5004
Number of extensions: 48766
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -