Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_F08
(1038 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 32 0.86
04_04_0009 + 22134160-22134696 31 1.1
02_04_0400 - 22608519-22608844,22609044-22609122 31 1.1
05_01_0142 - 940421-940701,941262-941574 31 2.0
06_03_1310 + 29238644-29240260 30 2.6
06_02_0144 - 12268981-12269628 30 2.6
05_04_0173 + 18724367-18724476,18724570-18724651,18724750-187248... 30 2.6
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526... 29 4.6
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 4.6
03_01_0515 - 3864796-3865425 29 8.0
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.9 bits (69), Expect = 0.86
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +2
Query: 287 PSPXXGXLAPPXXGPPPXXWGKXPPXXPP 373
P P PP GPPP K PP PP
Sbjct: 330 PPPKAAPPPPPPKGPPPPPPAKGPPPPPP 358
>04_04_0009 + 22134160-22134696
Length = 178
Score = 31.5 bits (68), Expect = 1.1
Identities = 16/46 (34%), Positives = 17/46 (36%)
Frame = +1
Query: 475 KKXGGGXXXXPPPPXXFXKKXGGXXXPPXXXXXKKXXGGGXGGGFF 612
K GGG PPPP K GG GGG G +F
Sbjct: 55 KACGGGSTAPPPPPPSSSGKSGGGGGSNIREAAASGGGGGVWGKYF 100
Score = 29.9 bits (64), Expect = 3.5
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 473 KKXGGGGXXXPPPPPXXXXKXXGG 544
K GGG PPPPP K GG
Sbjct: 55 KACGGGSTAPPPPPPSSSGKSGGG 78
>02_04_0400 - 22608519-22608844,22609044-22609122
Length = 134
Score = 31.5 bits (68), Expect = 1.1
Identities = 15/42 (35%), Positives = 16/42 (38%)
Frame = -1
Query: 372 GGXXGGXFPQXXGGGPXXGGAKXPXXGEGFPPXXXXHFXXRW 247
GG GG GGG GG P G +PP H W
Sbjct: 73 GGGGGGGGGGGGGGGGGGGGYYPPWNGGYYPPGPGHHHNPHW 114
Score = 31.1 bits (67), Expect = 1.5
Identities = 19/60 (31%), Positives = 20/60 (33%)
Frame = -1
Query: 372 GGXXGGXFPQXXGGGPXXGGAKXPXXGEGFPPXXXXHFXXRWGKNXXPPGGXGKTRNPGW 193
GG GG GGG GG G G + W PP G G NP W
Sbjct: 56 GGGGGGGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGGYYPPWNGGYYPP-GPGHHHNPHW 114
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 30.7 bits (66), Expect = 2.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 291 PPSXGXWXPPXGAPPPXXGEKXPP 362
PP G + PP GA PP G PP
Sbjct: 41 PPPPGAYPPPPGAYPPPPGAYPPP 64
Score = 29.1 bits (62), Expect = 6.1
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 291 PPSXGXWXPPXGAPPPXXGEKXPPXXP 371
PP G + PP GA PP G P P
Sbjct: 55 PPPPGAYPPPPGAYPPQHGYPQPGGYP 81
>06_03_1310 + 29238644-29240260
Length = 538
Score = 30.3 bits (65), Expect = 2.6
Identities = 17/49 (34%), Positives = 18/49 (36%)
Frame = +1
Query: 223 PGGPXIFSPTGXKMXPXXGGKPFPXPWVFGXPXXGPPPXXLGKXXPXXP 369
PG P P+ P GG P P V G PPP G P P
Sbjct: 474 PGTPSS-PPSSSWSPPQGGGGKLPFPPVHGVAYSSPPPPPSGDKLPFPP 521
>06_02_0144 - 12268981-12269628
Length = 215
Score = 30.3 bits (65), Expect = 2.6
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 540 PXFFXKXXGGGGGXXXPPPP 481
P F+ GGGGG PPPP
Sbjct: 193 PVFWDSLRGGGGGPSSPPPP 212
>05_04_0173 +
18724367-18724476,18724570-18724651,18724750-18724840,
18725060-18725172,18725270-18725342,18725445-18725565,
18725665-18725782,18726609-18726748,18726824-18726881,
18727007-18727077,18727181-18727733
Length = 509
Score = 30.3 bits (65), Expect = 2.6
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Frame = -1
Query: 372 GGXXGGXFPQXXG--GGPXXGGAKXPXXGEGFPP 277
GG GG +P G GG G A P G G PP
Sbjct: 415 GGNQGGGYPNRGGQGGGGSYGNAPYPQQGRGPPP 448
>08_01_0600 -
5262573-5262773,5262850-5262952,5263050-5263180,
5263263-5263312,5265266-5265725,5266349-5266708
Length = 434
Score = 29.5 bits (63), Expect = 4.6
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 7/38 (18%)
Frame = +2
Query: 278 GGNPSPXXGXLAPPXXG-------PPPXXWGKXPPXXP 370
GG P G + PP PPP WG+ PP P
Sbjct: 15 GGGAPPQWGAIPPPVPHQQQQYAPPPPQMWGQAPPPPP 52
Score = 29.5 bits (63), Expect = 4.6
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 287 PSPXXGXLAPPXXGPPPXXWGKXPPXXPP 373
P P APP PPP WG+ PP P
Sbjct: 39 PPPQMWGQAPP---PPPQMWGQAPPPPQP 64
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.5 bits (63), Expect = 4.6
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 294 PSXGXWXPPXGAPPPXXGEKXPP 362
P+ G PP GAPPP PP
Sbjct: 36 PAYGHMPPPQGAPPPFLAPPPPP 58
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.7 bits (61), Expect = 8.0
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +2
Query: 287 PSPXXGXLAPPXXGPPPXXWGKXPPXXPP 373
P P G L PP PP PP PP
Sbjct: 62 PPPAAGPLMPPPPPPPSVTSSPPPPPLPP 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,890,953
Number of Sequences: 37544
Number of extensions: 398438
Number of successful extensions: 2331
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1917
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3059425352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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