Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_F04
         (863 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK092711-1|BAC03955.1|  149|Homo sapiens protein ( Homo sapiens ...    31   4.1  
AB051559-1|BAB21863.1|  752|Homo sapiens KIAA1772 protein protein.     31   4.1  
BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.        31   7.2  
BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.        31   7.2  
AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.       31   7.2  
BC035246-1|AAH35246.2|  817|Homo sapiens KIAA1666 protein protein.     30   9.5  
AB051453-1|BAB33336.1| 1003|Homo sapiens KIAA1666 protein protein.     30   9.5  

>AK092711-1|BAC03955.1|  149|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35392 fis, clone SKNSH2000716. ).
          Length = 149

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 20/39 (51%), Positives = 20/39 (51%)
 Frame = -3

Query: 555 RQGGGAYGKTPATRPFYGSXPFAGLLLTCSFLRYPPDSV 439
           RQ  G  G   A R F  S P  GLL  CS LR  PDSV
Sbjct: 69  RQHFGIPGYPEAARDF-SSSPAPGLLTLCSRLRAKPDSV 106


>AB051559-1|BAB21863.1|  752|Homo sapiens KIAA1772 protein protein.
          Length = 752

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +3

Query: 546 PPDEHHKNRRSSQXWRKPDRTIKIPGVSPGSS---LXRSPVPTLPLTGYLSAF-LPSGK 710
           PP + H+         +P   + +P V P S    L  +PVP  PLTG L    +P+G+
Sbjct: 325 PPKKRHRGWYPGSPLPQPGLVVPVPTVRPLSRTEPLLSAPVPQTPLTGILQPRPIPAGE 383


>BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.
          Length = 299

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 21/43 (48%), Positives = 23/43 (53%)
 Frame = -1

Query: 698 EKGGQVSGKRQGRNRRAXEGASRGNAWYLYSPVGFSPXLT*AS 570
           EKG +VSGKR+GRN  A   AS   A    S    SP  T AS
Sbjct: 3   EKGPEVSGKRRGRN-NAAASASAAAASAAASAACASPAATAAS 44


>BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.
          Length = 293

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 21/43 (48%), Positives = 23/43 (53%)
 Frame = -1

Query: 698 EKGGQVSGKRQGRNRRAXEGASRGNAWYLYSPVGFSPXLT*AS 570
           EKG +VSGKR+GRN  A   AS   A    S    SP  T AS
Sbjct: 3   EKGPEVSGKRRGRN-NAAASASAAAASAAASAACASPAATAAS 44


>AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.
          Length = 482

 Score = 30.7 bits (66), Expect = 7.2
 Identities = 21/43 (48%), Positives = 23/43 (53%)
 Frame = -1

Query: 698 EKGGQVSGKRQGRNRRAXEGASRGNAWYLYSPVGFSPXLT*AS 570
           EKG +VSGKR+GRN  A   AS   A    S    SP  T AS
Sbjct: 3   EKGPEVSGKRRGRN-NAAASASAAAASAAASAACASPAATAAS 44


>BC035246-1|AAH35246.2|  817|Homo sapiens KIAA1666 protein protein.
          Length = 817

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 572 TLKSXVAKTRQDYKDTRRFPWKLPXALSCSDPAAYRIPVRLSP 700
           +L S  A+  +D+    R+P   P + +C DP+ YR+   + P
Sbjct: 351 SLDSVPAQIPEDFFMCHRWPETPPFSYTCGDPSTYRVTFPVCP 393


>AB051453-1|BAB33336.1| 1003|Homo sapiens KIAA1666 protein protein.
          Length = 1003

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 572 TLKSXVAKTRQDYKDTRRFPWKLPXALSCSDPAAYRIPVRLSP 700
           +L S  A+  +D+    R+P   P + +C DP+ YR+   + P
Sbjct: 537 SLDSVPAQIPEDFFMCHRWPETPPFSYTCGDPSTYRVTFPVCP 579


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,665,963
Number of Sequences: 237096
Number of extensions: 2565056
Number of successful extensions: 6908
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6908
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11039988564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)