Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_F03
         (868 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0194 + 12885340-12885708,12886098-12886367,12886476-128865...    29   3.6  
12_01_0816 + 7502669-7503145                                           29   4.8  
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254     29   4.8  

>06_02_0194 +
           12885340-12885708,12886098-12886367,12886476-12886592,
           12888044-12888094,12889599-12889719,12890146-12890311,
           12890598-12890691
          Length = 395

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = -2

Query: 681 CLQTKKPPXPAVVC-----LPDQELPTLFPKVTGFSRAQIPNTVLL 559
           CL  ++PP PA +C     LPD +  T+   +  F R      VLL
Sbjct: 46  CLALRRPPPPAELCVLLNDLPDNDFATVVKSLVEFRRNNGDEPVLL 91


>12_01_0816 + 7502669-7503145
          Length = 158

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 413 RRSGRAERGVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERR 282
           R SG  +R V    PAW ER   + ++ +V  E+A      ERR
Sbjct: 8   RSSGEGDRPVARWWPAWQEREKESLESSAVEGERATAEVGSERR 51


>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
          Length = 425

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 592 QQSADTKYCSSSVAVVRPPLQELCSTAYIPRSA 494
           Q S   K   SSVA   PP + L ST  +PR++
Sbjct: 176 QNSIAAKLACSSVAAASPPPRNLVSTTPVPRNS 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,427,558
Number of Sequences: 37544
Number of extensions: 485459
Number of successful extensions: 1434
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)