Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_F03
         (868 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   2.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   2.1  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 701  KGSQEDPLIFSTGSD 745
            +G Q+DP+IFST  D
Sbjct: 1126 EGEQKDPVIFSTSFD 1140


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 369 WAVCTNPPFSPTAAP 413
           W V  +PP+SP  AP
Sbjct: 264 WDVLPHPPYSPDLAP 278


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = +3

Query: 180 WRNPTGL*RYQAFPPGSSLXALSXFRPCRLPDTCPPF 290
           + NP    RYQ  P G  L  L      RL D  P F
Sbjct: 91  YENPDEEKRYQEHPNGKILRELQTDYDRRLHDNSPSF 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,507
Number of Sequences: 438
Number of extensions: 5160
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)