Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_F02
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF...   112   5e-26
SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F ...   110   2e-25
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   5.9  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.8  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    26   7.8  

>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
           4F complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score =  112 bits (270), Expect = 5e-26
 Identities = 60/166 (36%), Positives = 89/166 (53%), Gaps = 4/166 (2%)
 Frame = +3

Query: 186 LQNQWSLWFYDND-RNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQG 362
           LQ++W+LWF     +   W + L E+ +F TVE+FW ++  I   S L    DY+ F +G
Sbjct: 66  LQHEWTLWFLKPPTQGLEWSDLLKEIISFKTVEEFWGIFKTISKASMLPAKSDYSYFLKG 125

Query: 363 IRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFE-NSDEICGAVVNVR 539
           IRP WED  N  GG+W  + + K + ++LD  WL +VL  IGE  +    E+ G V N+R
Sbjct: 126 IRPEWEDPQNMNGGKW--AYQSKHKGSNLDELWLYMVLAAIGETLDPTGKEVTGVVCNMR 183

Query: 540 PXVDKIAIWTADAMKQHATIEIGKXLKEQLXIHG--XIGFQVHRDT 671
               +IA+WT +   +    +IG   KE L I     I +  H D+
Sbjct: 184 KGFYRIAVWTRNCNDKDVLEKIGLRFKEVLGISDKETIEYSAHEDS 229


>SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F
           complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 218

 Score =  110 bits (265), Expect = 2e-25
 Identities = 59/173 (34%), Positives = 86/173 (49%), Gaps = 4/173 (2%)
 Frame = +3

Query: 165 NF*SSTRLQNQWSLWFY-DNDRNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHD 341
           NF     L   W+LWF         W E    + TF++VE+FW ++++I   S L    D
Sbjct: 33  NFNLKHPLARPWTLWFLMPPTPGLEWNELQKNIITFNSVEEFWGIHNNINPASSLPIKSD 92

Query: 342 YAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFE-NSDEIC 518
           Y+ F++G+RP WED  NK GG+W     K +    LD  WL  VL  IGE  +    E+ 
Sbjct: 93  YSFFREGVRPEWEDVHNKTGGKWAFQ-NKGRGGNALDEMWLTTVLAAIGETLDPTGQEVM 151

Query: 519 GAVVNVRPXVDKIAIWTADAMKQHATIEIGKXLKEQLXI--HGXIGFQVHRDT 671
           G V+N+R    ++A+WT     +   +EIG   K+ L +     I F  H D+
Sbjct: 152 GVVINMRKGFYRLAVWTKSCNNREVLMEIGTRFKQVLNLPRSETIEFSAHEDS 204


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 27/99 (27%), Positives = 46/99 (46%)
 Frame = -1

Query: 526  TAPQISSEFSKFSPIKRRTTSNQNLSKSVKRCFFSRLISHLPPILLASSSHIGRMPCLNT 347
            T+P +S    + S I   +TSN N+  S    F S + +        +S+ I +   LN+
Sbjct: 3801 TSPSLSETIPQSSSISEASTSNPNILSSTVLSFDSTITNS----FTTASTSIMKTTSLNS 3856

Query: 346  A*S*PWRSSDGSLI*WYNLQKSSTVSNVVNSIRFSSHVL 230
              S  W +S    + +YN   SSTV    ++ R +S+ +
Sbjct: 3857 N-SYKWYNSTTQSV-YYN-ATSSTVPWSNSTFRNTSNTM 3892


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 363 IRPMWEDDANKMGGRWLIS-LEKKQRFTDLDRFWLDVV 473
           +  +WE   N   G +L   +EKK  F  +DR+W  V+
Sbjct: 161 VAALWEQ-FNIFHGSYLFDEIEKKSSFEIIDRWWTSVL 197


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +1

Query: 172 DQAPXYKTSGVSGFTT---MTETKHGRRILL 255
           D AP Y  + VSG  T   + ET+H R IL+
Sbjct: 362 DPAPLYSFTRVSGIVTYMKIFETEHSRSILV 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,823,607
Number of Sequences: 5004
Number of extensions: 52160
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)