Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_F01
         (1004 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8LK02 Cluster: Putative uncharacterized protein S126P2...    35   3.8  
UniRef50_UPI0000F1F796 Cluster: PREDICTED: hypothetical protein;...    34   5.0  

>UniRef50_Q8LK02 Cluster: Putative uncharacterized protein
           S126P21.5; n=1; Sorghum bicolor|Rep: Putative
           uncharacterized protein S126P21.5 - Sorghum bicolor
           (Sorghum) (Sorghum vulgare)
          Length = 769

 Score = 34.7 bits (76), Expect = 3.8
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +2

Query: 434 SPTXPPXPPXSXPPPPXEXXXPXXXSXXXXXXPP 535
           +PT PP PP S PPPP     P          PP
Sbjct: 483 TPTPPPPPPRSPPPPPRSPTPPPRSPTPKRSAPP 516


>UniRef50_UPI0000F1F796 Cluster: PREDICTED: hypothetical protein;
           n=2; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 1493

 Score = 34.3 bits (75), Expect = 5.0
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +2

Query: 422 LXRLSPTXPPXPPXSXPPPPXEXXXPXXXSXXXXXXPP 535
           L +L P  PP PP + PPPP +   P          PP
Sbjct: 842 LPQLPPGIPPPPPQAVPPPPPQAVPPPPLQAVPPPPPP 879


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 264,485,912
Number of Sequences: 1657284
Number of extensions: 2129078
Number of successful extensions: 36700
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27737
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 95122559191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)