Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_E22
         (974 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1619 - 28283250-28285238                                         31   1.8  
01_07_0346 + 42889121-42890406,42896115-42896118                       29   5.6  
08_02_0766 - 20993207-20993307,20993510-20993612,20993686-209937...    28   9.8  

>08_02_1619 - 28283250-28285238
          Length = 662

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = -1

Query: 236 AGWNRGRPXCPWGFLRISFALTLTRRLP 153
           A W    P C W  LR S A TL R LP
Sbjct: 50  ATWTASTPLCQWRGLRWSTAATLPRELP 77


>01_07_0346 + 42889121-42890406,42896115-42896118
          Length = 429

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +3

Query: 129 PEXKQSKHGQPPGKC--QGKRNSKKTPRA 209
           P  ++ +HG+P  +   + +RNS++TPRA
Sbjct: 164 PPTREDQHGEPDARLDIERRRNSRRTPRA 192


>08_02_0766 -
           20993207-20993307,20993510-20993612,20993686-20993730,
           20993848-20993916,20994463-20994510,20995357-20995404,
           20995492-20995551,20996063-20996119,20996403-20996471,
           20996511-20996603
          Length = 230

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 142 KANMGSRLVSVRAKEIRRKPQGXKGLPLFQPAFKGXTSLTFFXKW 276
           K+N        +A + ++K Q    L  F P F    S+TFF +W
Sbjct: 114 KSNKAESKSKSKANDDKKKQQRPFVLQFFSPIFIKAFSITFFGEW 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,488,706
Number of Sequences: 37544
Number of extensions: 271821
Number of successful extensions: 632
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2834967080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)