Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_E19
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    24   3.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.9  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   3.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.9  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.8 bits (49), Expect(2) = 3.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 604 PPPPPPP 624
           PPPPPPP
Sbjct: 24  PPPPPPP 30



 Score = 21.0 bits (42), Expect(2) = 3.5
 Identities = 8/22 (36%), Positives = 8/22 (36%)
 Frame = +1

Query: 478 GGXXPPXXXXXXXXXXXPPPPP 543
           G   PP           PPPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPP 28


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +2

Query: 530 PPPPXXXXXXXXXXXXXXXXXXXXXPPPPPPP 625
           PPPP                     PPPPPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 604 PPPPPPPXXXXPXPKKK 654
           PPPPPPP      PK +
Sbjct: 371 PPPPPPPELLNHSPKSR 387


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +1

Query: 529 PPPPPXXXXXXXXXXXXXXXXXXXXPPPPPPP 624
           PPP P                    PPPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,997,583
Number of Sequences: 5004
Number of extensions: 31850
Number of successful extensions: 241
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)