Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_E19
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    26   0.44 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   0.57 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -3

Query: 109  NSVKNFSEPILINLQILLAFLKI 41
            N++KNF++P+L+N Q+   +L +
Sbjct: 1029 NALKNFNQPLLVNDQLGQLYLDL 1051


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 606 PPPPPPXXXXPXXXK 650
           PPPPPP    P   K
Sbjct: 343 PPPPPPSSSGPDSAK 357



 Score = 23.0 bits (47), Expect(2) = 0.57
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 607 PPPPPPXXXXPXPKK 651
           PPPPPP    P   K
Sbjct: 343 PPPPPPSSSGPDSAK 357



 Score = 20.6 bits (41), Expect(2) = 0.57
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 604 PPPPPPP 624
           P PPPPP
Sbjct: 341 PAPPPPP 347


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 605  PPPPPPP 625
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 604  PPPPPPP 624
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,867
Number of Sequences: 438
Number of extensions: 5769
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)