Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_E18
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    33   0.22 
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    33   0.22 
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    33   0.22 
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    30   1.6  
AL032663-9|CAA21764.2|  187|Caenorhabditis elegans Hypothetical ...    29   4.8  
Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
 Frame = +1

Query: 514 PXPFXPPXXFXXPXPXKKXXFPPXXXG----PPXGXXXKKXGGPPXXKXXGGGXP 666
           P P  PP     P P      PP   G    PP G      GGPP      GG P
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = -3

Query: 708 PPXXXXXXXXXFXXGXPPPPXFXXGGAPXFFXXXPPGG 595
           PP            G PPPP    GG P      PPGG
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 779


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
 Frame = +1

Query: 514 PXPFXPPXXFXXPXPXKKXXFPPXXXG----PPXGXXXKKXGGPPXXKXXGGGXP 666
           P P  PP     P P      PP   G    PP G      GGPP      GG P
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = -3

Query: 708 PPXXXXXXXXXFXXGXPPPPXFXXGGAPXFFXXXPPGG 595
           PP            G PPPP    GG P      PPGG
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 779


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
 Frame = +1

Query: 514 PXPFXPPXXFXXPXPXKKXXFPPXXXG----PPXGXXXKKXGGPPXXKXXGGGXP 666
           P P  PP     P P      PP   G    PP G      GGPP      GG P
Sbjct: 298 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 352



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = -3

Query: 708 PPXXXXXXXXXFXXGXPPPPXFXXGGAPXFFXXXPPGG 595
           PP            G PPPP    GG P      PPGG
Sbjct: 325 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 362


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/43 (37%), Positives = 16/43 (37%)
 Frame = -2

Query: 676 FXXGGPPPPXFXXXGGPXFFFXXPPXGXXKXXGGKXXFXGAXG 548
           F  G PPPP F    GP   F  PP G          F G  G
Sbjct: 751 FNAGAPPPP-FGRGAGPMSSFPPPPRGGMHHMPPPPSFRGGRG 792


>AL032663-9|CAA21764.2|  187|Caenorhabditis elegans Hypothetical
           protein Y75B12B.1 protein.
          Length = 187

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 38  DLNCWTVRFYGSDHEDCLDFSGA 106
           + + W  RFY  DH+ CLD + A
Sbjct: 146 EFDFWWNRFYNGDHDLCLDMTAA 168


>Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical
           protein T03D8.3 protein.
          Length = 211

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 305 VGFHVCVAVLAGLDVEVLGDFVVLSFIADLVNVVEK 198
           V F V VA + GLD+E  GDFV+ S   D ++++ +
Sbjct: 8   VFFTVGVAAIYGLDLENAGDFVLPS--GDFIDLISR 41


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,876,224
Number of Sequences: 27780
Number of extensions: 327573
Number of successful extensions: 695
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)