Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_E17
(896 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine 5',5'''-p1,p6-hexapho... 32 0.13
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 28 1.6
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 1.6
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 27 2.7
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 27 3.6
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 27 4.8
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|... 27 4.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 4.8
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 6.3
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran... 26 6.3
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch... 26 8.4
>SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine
5',5'''-p1,p6-hexaphosphate hydrolase Aps1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 31.9 bits (69), Expect = 0.13
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +3
Query: 447 RRAACICVRSDAETEVLLVTSSRRPDNWIVPGGGSRA 557
R AA + S + +VLLV+S+++ +W+VP GG A
Sbjct: 42 RLAAGVVALSADKRKVLLVSSAKKHPSWVVPKGGWEA 78
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = -1
Query: 647 SNTPRHRPSFPITPASSSTSRIAVTEGSSSGSTPPARHNPV 525
+NT +PS TP +++T+++++T G+++ S P+
Sbjct: 98 TNTSISKPSQTATPQNTNTTQVSLTNGTTTNSYSNTNSLPI 138
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 644 NTPRHRPSFPITPASSSTSRIAVTEGSSSGS 552
NT H P+ T +SSST+ +A +G +S S
Sbjct: 813 NTSFHAPTVSSTTSSSSTTSLAANKGVNSNS 843
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 508 LRDGPTTGLCRAGGVEPEEEPSVTAMREVLEEAGVI 615
L GP L A + PEE S+ ++ L+ AG++
Sbjct: 337 LSSGPPASLYNANALTPEESSSIDSLFANLQAAGLV 372
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 656 SRFSNTPRHRPSFPITPASSSTSRIAVTEGSSSGSTPPARHN 531
+ +SNTP P +TP+++ +S ++ SSS S P N
Sbjct: 344 ANYSNTP---PRNTVTPSTARSSTLSQNPSSSSNSIPLISRN 382
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = -1
Query: 608 PASSSTSRIAVTE---GSSSGSTPPARHNPVVGPSRRRHQQDL 489
P +S+SRI + SSS +TPP +P V PS H +L
Sbjct: 7 PTDNSSSRINSSVPLINSSSPATPPESFDPQVFPSSLIHGDNL 49
>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 376
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 535 CRAGGVEPEEEPSVTAMREVLEEAGV 612
C AG +EP E +RE EE+GV
Sbjct: 256 CLAGFLEPGESLEEAVVRETYEESGV 281
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 4.8
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 647 SNTPRHRPSFPITPASSSTSRIAVTEGSSSGSTP 546
S+T + P T S +TS T GSSS STP
Sbjct: 213 SSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTP 246
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -1
Query: 656 SRFSNTPRHRPSFPITPASSST---SRIAVTEGSSSGSTP 546
+R ++TP + S P P+SSST S I T S S P
Sbjct: 107 TRLTSTPSNSSSLPSIPSSSSTPSISSIPHTTSSVSNDIP 146
>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
transcription factor Ams2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 697
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 641 TPRHRPSFPITPASSSTSRIAVTEGS 564
TPRH+P F ++ A SS ++ E S
Sbjct: 618 TPRHKPKFDLSKALSSVAKSNNIENS 643
>SPCC4F11.04c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 277 HIRCILCRTYPFSTIKLHNVHKKSNYNNNKTTI 179
HIR +L R Y FS ++ S+++NN I
Sbjct: 256 HIRVLLERDYKFSNDSYFTFYEGSSWHNNDAGI 288
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,465,787
Number of Sequences: 5004
Number of extensions: 69480
Number of successful extensions: 221
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -