Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_E14
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.009
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.4  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.5 bits (78), Expect = 0.009
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +3

Query: 711 PPPPXXLXGXGGXPPPPPXPFXKXXGXXXXPP 806
           PPPP  + G G  PPPPP P     G     P
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795



 Score = 32.3 bits (70), Expect = 0.084
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +2

Query: 710 PPPPPXXXGGGGXXPPPP 763
           PPPPP    G G  PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780



 Score = 31.5 bits (68), Expect = 0.15
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +3

Query: 714 PPPXXLXGXGGXPPPPPXPFXKXXGXXXXPP 806
           PPP  + G  G PPPPP P     G    PP
Sbjct: 752 PPPAPIMG--GPPPPPPPPGVAGAGPPPPPP 780



 Score = 31.1 bits (67), Expect = 0.19
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +2

Query: 710 PPPPPXXXGGGGXXPPPP 763
           PPPPP   G  G  PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPP 778



 Score = 30.7 bits (66), Expect = 0.26
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 712 PPPPXXSGGXGXXPPPPP 765
           PPPP   G  G  PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPP 779



 Score = 29.1 bits (62), Expect = 0.78
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -2

Query: 756 GGXXPPPPXXXGGGGGXXFFXXPPPPP 676
           GG  PPPP     G G      PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPP--PPPPPPP 783



 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 710 PPPPPXXXGGGGXXPPPP 763
           P PPP    GG   PPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPP 767



 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -3

Query: 752 GXXPXPPEXXGGGGXFXFXXPPPPP 678
           G  P PP   G  G      PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +2

Query: 680 GGGGXXKXXXPPPPPXXXGGGGXXPPPP 763
           G G       PPPPP      G  P PP
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPP 355



 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/36 (30%), Positives = 13/36 (36%)
 Frame = +3

Query: 699 KXKXPPPPXXLXGXGGXPPPPPXPFXKXXGXXXXPP 806
           + +  PP          PPPPP P     G    PP
Sbjct: 320 RNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355



 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = +2

Query: 677 GGGGGXXKXXXPPPPPXXXGGGGXXPPP 760
           G G        PPPPP     G    PP
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPP 355



 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 710 PPPPPXXXGGGGXXPPP 760
           PPPPP      G  PPP
Sbjct: 362 PPPPPRSAPSTGRQPPP 378


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 711 PPPPXXLXGXGGXPPPPPXPFXK 779
           PPPP         PPPPP  + K
Sbjct: 12  PPPPPGFEPPSQPPPPPPPGYVK 34



 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 711 PPPPXXLXGXGGXPPPPPXP 770
           PPPP         PPPPP P
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 712 PPPPXXSGGXGXXPPPPPLXFXK 780
           PPPP         PPPPP  + K
Sbjct: 12  PPPPPGFEPPSQPPPPPPPGYVK 34


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 763 GGGGGXPPXPXXXXGGGG 710
           GG GG PP P    G GG
Sbjct: 195 GGSGGPPPGPGGFGGFGG 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,812,731
Number of Sequences: 5004
Number of extensions: 24486
Number of successful extensions: 284
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)