Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_E12
         (859 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal prote...   199   2e-51
Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal prote...   199   2e-51
Z66495-14|CAH04729.1|  353|Caenorhabditis elegans Hypothetical p...   199   2e-51
Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical p...   199   2e-51
Z49936-7|CAH10799.1|  353|Caenorhabditis elegans Hypothetical pr...   199   2e-51
Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical pr...   199   2e-51
Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical p...    46   3e-05
Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical pr...    46   3e-05

>Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score =  199 bits (486), Expect = 2e-51
 Identities = 84/116 (72%), Positives = 100/116 (86%)
 Frame = +2

Query: 86  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 265
           F  P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6   FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65

Query: 266 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 433
           K+NKKE+VEAVTI+ETPPMV  GV GY++TP G RAL T+WAEH+SE+ RRRFY N
Sbjct: 66  KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121



 Score = 37.5 bits (83), Expect = 0.012
 Identities = 19/42 (45%), Positives = 27/42 (64%)
 Frame = +1

Query: 655 FKXMIRYCSVVRVIAHTQMKLLNSDXRRLTLWKSNLNRVGTI 780
           F  + +YCS +RVIAHTQMK+L    ++  L +  +N  GTI
Sbjct: 150 FAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNG-GTI 190


>Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score =  199 bits (486), Expect = 2e-51
 Identities = 84/116 (72%), Positives = 100/116 (86%)
 Frame = +2

Query: 86  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 265
           F  P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6   FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65

Query: 266 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 433
           K+NKKE+VEAVTI+ETPPMV  GV GY++TP G RAL T+WAEH+SE+ RRRFY N
Sbjct: 66  KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121



 Score = 37.5 bits (83), Expect = 0.012
 Identities = 19/42 (45%), Positives = 27/42 (64%)
 Frame = +1

Query: 655 FKXMIRYCSVVRVIAHTQMKLLNSDXRRLTLWKSNLNRVGTI 780
           F  + +YCS +RVIAHTQMK+L    ++  L +  +N  GTI
Sbjct: 150 FAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNG-GTI 190


>Z66495-14|CAH04729.1|  353|Caenorhabditis elegans Hypothetical
           protein F13B10.2c protein.
          Length = 353

 Score =  199 bits (486), Expect = 2e-51
 Identities = 84/116 (72%), Positives = 100/116 (86%)
 Frame = +2

Query: 86  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 265
           F  P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6   FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65

Query: 266 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 433
           K+NKKE+VEAVTI+ETPPMV  GV GY++TP G RAL T+WAEH+SE+ RRRFY N
Sbjct: 66  KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121



 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 655 FKXMIRYCSVVRVIAHTQM 711
           F  + +YCS +RVIAHTQM
Sbjct: 150 FAKLKKYCSSIRVIAHTQM 168


>Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score =  199 bits (486), Expect = 2e-51
 Identities = 84/116 (72%), Positives = 100/116 (86%)
 Frame = +2

Query: 86  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 265
           F  P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6   FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65

Query: 266 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 433
           K+NKKE+VEAVTI+ETPPMV  GV GY++TP G RAL T+WAEH+SE+ RRRFY N
Sbjct: 66  KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121



 Score = 37.5 bits (83), Expect = 0.012
 Identities = 19/42 (45%), Positives = 27/42 (64%)
 Frame = +1

Query: 655 FKXMIRYCSVVRVIAHTQMKLLNSDXRRLTLWKSNLNRVGTI 780
           F  + +YCS +RVIAHTQMK+L    ++  L +  +N  GTI
Sbjct: 150 FAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNG-GTI 190


>Z49936-7|CAH10799.1|  353|Caenorhabditis elegans Hypothetical
           protein F13B10.2c protein.
          Length = 353

 Score =  199 bits (486), Expect = 2e-51
 Identities = 84/116 (72%), Positives = 100/116 (86%)
 Frame = +2

Query: 86  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 265
           F  P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6   FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65

Query: 266 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 433
           K+NKKE+VEAVTI+ETPPMV  GV GY++TP G RAL T+WAEH+SE+ RRRFY N
Sbjct: 66  KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121



 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 655 FKXMIRYCSVVRVIAHTQM 711
           F  + +YCS +RVIAHTQM
Sbjct: 150 FAKLKKYCSSIRVIAHTQM 168


>Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score =  199 bits (486), Expect = 2e-51
 Identities = 84/116 (72%), Positives = 100/116 (86%)
 Frame = +2

Query: 86  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 265
           F  P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6   FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65

Query: 266 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 433
           K+NKKE+VEAVTI+ETPPMV  GV GY++TP G RAL T+WAEH+SE+ RRRFY N
Sbjct: 66  KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121



 Score = 37.5 bits (83), Expect = 0.012
 Identities = 19/42 (45%), Positives = 27/42 (64%)
 Frame = +1

Query: 655 FKXMIRYCSVVRVIAHTQMKLLNSDXRRLTLWKSNLNRVGTI 780
           F  + +YCS +RVIAHTQMK+L    ++  L +  +N  GTI
Sbjct: 150 FAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNG-GTI 190


>Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = +2

Query: 86  FQHPXHGSMGFYPKKRSRRHRGKVKAFPK 172
           F  P HG MGF PKKRSR +RG++KAF K
Sbjct: 6   FSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34



 Score = 37.5 bits (83), Expect = 0.012
 Identities = 19/42 (45%), Positives = 27/42 (64%)
 Frame = +1

Query: 655 FKXMIRYCSVVRVIAHTQMKLLNSDXRRLTLWKSNLNRVGTI 780
           F  + +YCS +RVIAHTQMK+L    ++  L +  +N  GTI
Sbjct: 52  FAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNG-GTI 92


>Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical
           protein F13B10.2d protein.
          Length = 303

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = +2

Query: 86  FQHPXHGSMGFYPKKRSRRHRGKVKAFPK 172
           F  P HG MGF PKKRSR +RG++KAF K
Sbjct: 6   FSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34



 Score = 37.5 bits (83), Expect = 0.012
 Identities = 19/42 (45%), Positives = 27/42 (64%)
 Frame = +1

Query: 655 FKXMIRYCSVVRVIAHTQMKLLNSDXRRLTLWKSNLNRVGTI 780
           F  + +YCS +RVIAHTQMK+L    ++  L +  +N  GTI
Sbjct: 52  FAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNG-GTI 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,007,050
Number of Sequences: 27780
Number of extensions: 397852
Number of successful extensions: 891
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)