Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_E12
         (859 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   1.6  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   2.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.7  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.3  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 666 HXLESFSIDWRPSSSCHFLLALVKAFFLHLYLI 568
           H  E + +   P+ S H+LLAL+   F  L L+
Sbjct: 32  HIPEHWLVYPEPNPSLHYLLALLYILFTFLALL 64


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 705 SNEAVKQRXKKAHIMEIQP*PG 770
           + E V +  +KAH ME++P PG
Sbjct: 170 AKEDVIEVIQKAHNMELEPTPG 191


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 337 CWIH*DPSWTTRSVDCLG 390
           C  + D +W T +VDC G
Sbjct: 765 CKCYNDRTWNTNAVDCSG 782


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 303 MVTASTISFLLIFEPGRSGSLTTWVI 226
           MV   TI +++IF  G  G++TT  +
Sbjct: 39  MVIPLTIIYMIIFVTGIFGNITTCTV 64


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 642 DWRPSSSCHFLL 607
           DW+P   C+F L
Sbjct: 420 DWKPLDKCYFCL 431


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,612
Number of Sequences: 438
Number of extensions: 4759
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)