Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_E09
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0037 - 17452503-17452523,17452594-17452689,17453315-174534... 31 1.2
03_05_0975 + 29333960-29334171,29336442-29336523,29336663-293366... 29 3.6
10_04_0003 + 7382881-7383285,7383455-7383631,7383661-7383978 28 8.3
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029... 28 8.3
08_02_1159 + 24773328-24773994,24775430-24775558,24776080-247762... 28 8.3
07_01_1029 - 8902771-8902805,8903135-8903256,8904097-8904425,890... 28 8.3
04_04_1553 - 34363848-34366058,34369087-34370451 28 8.3
02_03_0154 + 15797731-15798798 28 8.3
>01_05_0037 -
17452503-17452523,17452594-17452689,17453315-17453419,
17453699-17453869,17454309-17454378,17454698-17454879,
17457297-17457406,17458353-17458457,17458537-17458615,
17458722-17458762,17459019-17459097,17460620-17460814
Length = 417
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -1
Query: 333 QSRGQNLGSFLGRHIYRYRLSDIPLYIRIRLCSTLASPMG--RA*VSPSLSTSLGHAVLG 160
QS NLG GRH+ + + P Y ++ C L + +G A + L T+L + +L
Sbjct: 121 QSLAANLGIITGRHLAELCMGEYPKY--VKYCLWLLAELGVIAATIPGVLGTALAYNMLL 178
Query: 159 HI 154
HI
Sbjct: 179 HI 180
>03_05_0975 +
29333960-29334171,29336442-29336523,29336663-29336695,
29336803-29336923,29337398-29337577,29337578-29337670,
29338459-29338566,29338654-29338830,29338937-29338992,
29339071-29339155,29339994-29340535
Length = 562
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +3
Query: 216 PLVRQEYCKAGCVCKEGYLKDDSGKCVARENCPNSDL--CSENEIYVKCVQAQCGPMTCS 389
PLV QE+ G V + Y+ D+ + V R + PN D+ S N + + C
Sbjct: 267 PLVLQEFVNHGGVLFKVYIVGDAIRVVRRFSLPNVDVGDLSNNAGVFRFPRVSCASANAD 326
Query: 390 EKDL 401
+ DL
Sbjct: 327 DADL 330
>10_04_0003 + 7382881-7383285,7383455-7383631,7383661-7383978
Length = 299
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 514 IRNVQAKMKSFPTAR-THVRRVLAIHSSLVLSSKPKPWRRGMHLANQ 651
+R +Q + +++ AR T + + L H+ L+ + K WR+G+ L +
Sbjct: 118 LRQMQKQQQAYEAARRTKLNQSLPKHTINHLAKRHKQWRKGLRLCRR 164
>08_02_1453 - 27199228-27200579,27200712-27202646,27202905-27202966,
27203525-27203545,27204305-27204344,27204345-27204792,
27204866-27204964,27205071-27205394,27205446-27205574,
27205657-27205875,27205976-27206194,27206436-27206669,
27206773-27206943,27207466-27207577,27207955-27208010,
27208083-27208181,27208901-27209134,27209258-27209311,
27209363-27209422
Length = 1955
Score = 28.3 bits (60), Expect = 8.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 684 VKICECPQMASSPDCPKL 737
++I +CP++A PDCP L
Sbjct: 1701 LRISDCPKLAGIPDCPVL 1718
>08_02_1159 +
24773328-24773994,24775430-24775558,24776080-24776220,
24777393-24777487,24777545-24778606
Length = 697
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/86 (23%), Positives = 28/86 (32%)
Frame = +3
Query: 90 AFVNIIVLCTADLCSENEIYVKCVQEQRGPMTCSEKDLLMPYPLVRQEYCKAGCVCKEGY 269
A +N ++L + CS + P CS Y +Y C C +GY
Sbjct: 155 AMLNWLILSNSSACSAS---TNASAPSSAPECCSANSFCKGYNGTTADYDGYRCYCSDGY 211
Query: 270 LKDDSGKCVARENCPNSDLCSENEIY 347
G C + D C IY
Sbjct: 212 ----EGNPYVDGGCRDIDECKSPHIY 233
>07_01_1029 -
8902771-8902805,8903135-8903256,8904097-8904425,
8905435-8905530,8906126-8906257,8907244-8907348,
8907630-8907803,8908094-8908163,8908263-8908444,
8908669-8908778,8909778-8909882,8909965-8910043,
8910342-8910382,8910511-8910589,8910856-8910966
Length = 589
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -1
Query: 333 QSRGQNLGSFLGRHIYRYRLSDIPLYIRIRLCSTLASPMGRA*VSPSLSTSLGHAVLGHI 154
QS NLG GRH+ S+ P +++I L + A + + T+ +L HI
Sbjct: 93 QSLAANLGVVTGRHLAEICKSEYPKFVKIFLWLLAELAVIAADIPEVIGTAFAFNILFHI 152
>04_04_1553 - 34363848-34366058,34369087-34370451
Length = 1191
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 535 MKSFPTARTHVRRVLAIHSSLVLSSKPKPWRRGMHLANQI 654
++S R +RR A+H+ LV+SS P LANQ+
Sbjct: 21 LRSCSPRRAVLRRARAVHALLVVSSTPSSPALTTFLANQL 60
>02_03_0154 + 15797731-15798798
Length = 355
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 204 LMPYPLVRQEYCKAGCVCKEGYLKDDSGKCVARENCPN 317
L+ PLV QE+ G V + Y+ D CV R + P+
Sbjct: 171 LLRAPLVLQEFVNHGGVLFKVYVVGDRATCVRRSSLPD 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,208,792
Number of Sequences: 37544
Number of extensions: 498727
Number of successful extensions: 1197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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