Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_E07
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    31   0.27 
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|...    30   0.35 
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    27   2.5  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    26   5.7  
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    26   7.6  
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr...    26   7.6  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +3

Query: 144  WLMTLXQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGTGRFKCSENRN*RSQAKRC 323
            WL+ L  +    + Q    N  D +  ++    T   C+ G     CSEN N RS A  C
Sbjct: 1069 WLIVLDLVNYADSLQIKDQNIFDNLQSIKMLDLT--TCINGIFESLCSENENTRSNALSC 1126


>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 330

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +1

Query: 190 APRTMLKTKSLKLKQHCVPLETASRGLVDLNVLKTEIEEAKP 315
           A R +L+TKSL  K   VPL+   + L+D N+++   + + P
Sbjct: 187 AARLVLETKSLIGKLFMVPLDVTHKVLLDANIIQLLRQHSNP 228


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
 Frame = +1

Query: 166 LQRL*PRNAPRTMLKTKSLKLKQHCVPLETAS-RGLVDLNVLKTEIEEAKP-NGALDEVF 339
           L+ L  +N+ + + +T +++L++    LET   +   DLN +    EE +     +D + 
Sbjct: 482 LRLLASKNSDKALAET-NIRLQEVTKELETLRMKNSNDLNEIHDLREENEGLTLKIDSIT 540

Query: 340 KKYCDKSAQLKGCISSVLQGVRPCVG--NDYANHINDAQNSTNQLIDFVCYKDGD 498
           K+      +L+  I S    V    G  ++Y N + D + + N++++   YKD D
Sbjct: 541 KEKDRLINELEQRIKSYEVNVSELNGTIDEYRNKLKDKEETYNEVMNAFQYKDND 595


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = -2

Query: 656 ISSTFAHFSTRLKLLXDSTVGKLCFKFKKHVLRFSVFCWKHSGPPSAMNKAIRSP 492
           +  +   F++RL+ L D        K     +  S+  W+   PPS ++ + +SP
Sbjct: 280 VGGSILEFNSRLQKLVDDPNSLKAIKTSTQNVGRSIVYWEKEFPPSNIDSSPQSP 334


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
 Frame = +1

Query: 214 KSLKLKQ-HCVPLETASRGLVDLNVLKTEIEEAKPNGALDEVFKKYCDKS-AQLKGCISS 387
           K++ +KQ   +P E  +R + D N L   I +   +      ++ +  +  A++  C  +
Sbjct: 139 KNIFMKQLPKMPKEYITRLIYDRNHLSMTIVKDNLHVVGGITYRPFEQRGFAEIVFCAIA 198

Query: 388 VLQGVRPCVGNDYANHINDAQNSTNQLIDFVCYKDGDRIALFIAEG 525
             + VR   G+   NH+ D    T  +  F+ Y D   I  F  +G
Sbjct: 199 SNEQVRG-YGSHLMNHLKDYVRGTTTIQHFLTYADNYAIGYFKKQG 243


>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 207 EDKVPEVEAALRTFGNCLKGTGRFK 281
           ED  PE E    TFGN  +  G FK
Sbjct: 507 EDLAPETENGAFTFGNGPQAQGEFK 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,212,649
Number of Sequences: 5004
Number of extensions: 62779
Number of successful extensions: 172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)