Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP14_F_E07
         (834 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.65 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   2.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   2.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   2.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.1  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 0.65
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 196 RTMLKTKSLKLKQHCVPLETASRGLVDLNVLKTEI 300
           RTM K +  K K   V  +T  R L +LN L+TE+
Sbjct: 30  RTMSKIQWRKPKPAMVEEKTQLRYLEELNALRTEL 64


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 39  KICCQCVSNLSKSN 80
           K+C QCV NL+ +N
Sbjct: 543 KLCQQCVGNLASNN 556


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 39  KICCQCVSNLSKSN 80
           K+C QCV NL+ +N
Sbjct: 543 KLCQQCVGNLASNN 556


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 39  KICCQCVSNLSKSN 80
           K+C QCV NL+ +N
Sbjct: 543 KLCQQCVGNLASNN 556


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 764 GVGKGESLRMNLISDSAMFAGVGVEHXWRDFTIQ 663
           G+   + + +NL  D  +   V +EH W+D   Q
Sbjct: 51  GLRLSQLIDLNL-KDQILTTNVWLEHEWQDHKFQ 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,847
Number of Sequences: 438
Number of extensions: 4126
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)