Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_E03
(856 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 178 7e-46
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 145 6e-36
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 99 4e-22
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 98 2e-21
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 83 6e-17
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 80 3e-16
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 80 3e-16
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 77 3e-15
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 71 2e-13
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 66 8e-12
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 65 1e-11
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 63 4e-11
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 62 7e-11
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 62 1e-10
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 60 3e-10
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 60 3e-10
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 58 2e-09
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 58 2e-09
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 53 6e-08
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 50 6e-07
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 46 5e-06
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 44 4e-05
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 41 3e-04
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 38 0.002
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 29 0.64
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.5
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 1.9
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 28 1.9
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 2.6
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 3.4
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 27 3.4
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 4.5
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 27 4.5
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 26 5.9
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 5.9
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ... 26 5.9
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 7.8
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 7.8
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 178 bits (434), Expect = 7e-46
Identities = 82/107 (76%), Positives = 100/107 (93%)
Frame = +2
Query: 170 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQ 349
++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP + RDV+AQAQ
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQ 64
Query: 350 SGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 490
SGTGKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQIQKVV+ALG
Sbjct: 65 SGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALG 111
Score = 123 bits (296), Expect = 4e-29
Identities = 57/85 (67%), Positives = 71/85 (83%)
Frame = +1
Query: 577 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 756
+VVGTPGRV+DMI RRAL + +++FVLDEADEMLSRGFKDQI+D+F++L QV+LLS
Sbjct: 140 VVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLS 199
Query: 757 ATMPDDVLXVSRCFMXDPVRLLVXK 831
ATMP DVL V+ FM DP+R+LV K
Sbjct: 200 ATMPQDVLEVTTKFMRDPIRILVKK 224
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = +3
Query: 486 LGDHLNAKCHACIGGTNVREDIRQLE 563
LGD +N +CHACIGGT VR+D+ L+
Sbjct: 110 LGDLMNVECHACIGGTLVRDDMAALQ 135
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 145 bits (352), Expect = 6e-36
Identities = 74/108 (68%), Positives = 87/108 (80%), Gaps = 1/108 (0%)
Frame = +2
Query: 170 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQA 346
M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ +GRDVIAQA
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQA 65
Query: 347 QSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 490
QSGTGKTATFSI ILQ ID S+R+ QALIL+PTRELA QIQ VV+ALG
Sbjct: 66 QSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALG 113
Score = 101 bits (241), Expect = 2e-22
Identities = 47/93 (50%), Positives = 68/93 (73%)
Frame = +1
Query: 577 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 756
+V GTPGRV DMI RR L +K+ +LDEADE+L++GFK+QI+D+++ L QV+++S
Sbjct: 142 VVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVS 201
Query: 757 ATMPDDVLXVSRCFMXDPVRLLVXKRXSLPXKG 855
AT+P DVL ++ F +PVR+LV KR L +G
Sbjct: 202 ATLPQDVLEMTNKFTTNPVRILV-KRDELTLEG 233
Score = 46.8 bits (106), Expect = 4e-06
Identities = 17/26 (65%), Positives = 23/26 (88%)
Frame = +3
Query: 486 LGDHLNAKCHACIGGTNVREDIRQLE 563
LGDH+N +CHACIGGT+V DI++L+
Sbjct: 112 LGDHMNVQCHACIGGTSVGNDIKKLD 137
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 99 bits (238), Expect = 4e-22
Identities = 54/127 (42%), Positives = 76/127 (59%), Gaps = 4/127 (3%)
Frame = +2
Query: 122 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 289
+N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 290 IQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQ 469
IQ+ +I + GRD++A+A++GTGKTA F I L+++DT + Q LIL PTRELA Q
Sbjct: 70 IQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTS 129
Query: 470 KVVIALG 490
+V LG
Sbjct: 130 QVCKTLG 136
Score = 48.4 bits (110), Expect = 1e-06
Identities = 25/64 (39%), Positives = 35/64 (54%)
Frame = +1
Query: 577 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 756
+VVGTPGRV D+ + + FV+DEAD++LS F I + + Q+ L S
Sbjct: 165 IVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYS 224
Query: 757 ATMP 768
AT P
Sbjct: 225 ATFP 228
Score = 29.1 bits (62), Expect = 0.84
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 486 LGDHLNAKCHACIGGTNVREDIRQL 560
LG H+N K GGT +R+DI +L
Sbjct: 135 LGKHMNVKVMVTTGGTTLRDDIIRL 159
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 97.9 bits (233), Expect = 2e-21
Identities = 46/96 (47%), Positives = 73/96 (76%), Gaps = 2/96 (2%)
Frame = +2
Query: 209 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG--RDVIAQAQSGTGKTATFSI 382
V++F+++ LK ELL+GIY+ F+KPS IQ++A+ + R++I Q+QSGTGKTA F++
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 383 SILQQIDTSIRECQALILAPTRELAQQIQKVVIALG 490
++L ++D S+ + QA+ LAP+RELA+QI VV +G
Sbjct: 173 TMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMG 208
Score = 62.9 bits (146), Expect = 6e-11
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Frame = +1
Query: 577 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVILL 753
+V+GTPG V D++ RR L A IK+FVLDEAD ML +G DQ + +L + Q++L
Sbjct: 233 IVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLF 292
Query: 754 SATMPDDV 777
SAT + V
Sbjct: 293 SATFSERV 300
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 82.6 bits (195), Expect = 6e-17
Identities = 43/95 (45%), Positives = 62/95 (65%), Gaps = 6/95 (6%)
Frame = +2
Query: 212 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 391
+TF D NL L R I+ FEKP+++Q I ++G+D++AQA++G+GKTA + I IL
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPIL 73
Query: 392 Q------QIDTSIRECQALILAPTRELAQQIQKVV 478
+ QID + R AL+L PTRELAQQ+ V+
Sbjct: 74 ELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVL 108
Score = 46.8 bits (106), Expect = 4e-06
Identities = 24/83 (28%), Positives = 42/83 (50%)
Frame = +1
Query: 577 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 756
+V+ TP R + L + +K V+DEAD MLS G+ + + + + L Q L+S
Sbjct: 143 IVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMS 202
Query: 757 ATMPDDVLXVSRCFMXDPVRLLV 825
AT+ ++ + + +P L V
Sbjct: 203 ATLSKNIASLQKLVCRNPFILAV 225
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 80.2 bits (189), Expect = 3e-16
Identities = 45/84 (53%), Positives = 52/84 (61%)
Frame = +2
Query: 218 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 397
F D LK ELLR I GFE PS +QQ I I G DV+ QA+SG GKTA F +S LQQ
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 398 IDTSIRECQALILAPTRELAQQIQ 469
I+ E L+L TRELA QI+
Sbjct: 113 IEPVDGEVSVLVLCHTRELAFQIK 136
Score = 63.3 bits (147), Expect = 4e-11
Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Frame = +1
Query: 577 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVILL 753
+VV TPGR+ ++ + L N++K FVLDE D++L S + I +VF+ QV++
Sbjct: 176 IVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMF 235
Query: 754 SATMPDDVLXVSRCFMXDPVRLLVXKRXSLPXKG 855
SAT+ +++ + + FM +P+ + V L G
Sbjct: 236 SATLSNEIRPICKKFMQNPLEIYVDDETKLTLHG 269
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 80.2 bits (189), Expect = 3e-16
Identities = 47/142 (33%), Positives = 78/142 (54%)
Frame = +2
Query: 74 MSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLR 253
M+ S ++ +ED S N + S + D+ ++ +TF ++ + +EL
Sbjct: 1 MAPSEKKLTEDKKNSSLNKKIETSNS-SSEKSSENNNGDSQNNEAPKTFKELGVIDELCE 59
Query: 254 GIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALI 433
GF+ P+ IQQ AI + RDVI AQ+G+GKTA F++ ++Q++ + A++
Sbjct: 60 ACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVV 119
Query: 434 LAPTRELAQQIQKVVIALG*SL 499
LAPTRELA QI + A+G S+
Sbjct: 120 LAPTRELAYQISEQFEAIGGSI 141
Score = 51.2 bits (117), Expect = 2e-07
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = +1
Query: 577 LVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 753
++V TPGR+ D + + +K ++DEAD +L F I + K++ + + +L
Sbjct: 167 VLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLF 226
Query: 754 SATMPDDVLXVSRCFMXDPVRLLVXKRXS 840
SATM V + R + PVR+ V + S
Sbjct: 227 SATMTSKVEKLQRASLHQPVRVAVSSKFS 255
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 77.0 bits (181), Expect = 3e-15
Identities = 38/89 (42%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
Frame = +2
Query: 218 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 397
F M L + LLR I+ GF+ P+ IQ++ I ++GRDV+ A++G+GKTA F I +++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 398 IDTSI--RECQALILAPTRELAQQIQKVV 478
+ +++ +ALIL+P RELA Q KVV
Sbjct: 131 LKSTLANSNTRALILSPNRELALQTVKVV 159
Score = 54.8 bits (126), Expect = 1e-08
Identities = 26/79 (32%), Positives = 42/79 (53%)
Frame = +1
Query: 577 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 756
+VV TPGR + L ++I+ V DEAD + GF Q+ ++ L Q +L S
Sbjct: 192 IVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFS 251
Query: 757 ATMPDDVLXVSRCFMXDPV 813
AT+P ++ ++ + DPV
Sbjct: 252 ATLPRTLVDFAKAGLQDPV 270
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 70.9 bits (166), Expect = 2e-13
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Frame = +2
Query: 215 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 394
+F MNL +L+G+ GFE P+ IQ + I + G+D++ A +G+GKTA F + IL+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 395 QI---DTSIRECQALILAPTRELAQQIQKVVIALG*SLEC*MPCL 520
++ + + LIL PTRELA Q V + S M CL
Sbjct: 320 RLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIA-SFTDIMVCL 363
Score = 60.5 bits (140), Expect = 3e-10
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Frame = +1
Query: 577 LVVGTPGRVYD-MITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 753
+V+ TPGR D M + I++ V+DEAD ML GF D+++++ + Q +L
Sbjct: 383 IVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLF 442
Query: 754 SATMPDDVLXVSRCFMXDPVRLLVXKR 834
SATM D V + R + PVR+ V +
Sbjct: 443 SATMTDKVDDLIRLSLNRPVRVFVDNK 469
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 65.7 bits (153), Expect = 8e-12
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 4/90 (4%)
Frame = +2
Query: 209 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---S 379
+E F D+ L E + + I GFE + IQ+R+I P + GRDV+ A++G+GKT F +
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPT 147
Query: 380 ISILQQIDTSIRE-CQALILAPTRELAQQI 466
I +L + R +I++PTRELA QI
Sbjct: 148 IEMLYALKFKPRNGTGVIIISPTRELALQI 177
Score = 47.2 bits (107), Expect = 3e-06
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Frame = +1
Query: 577 LVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML-SADVQVIL 750
L+V TPGR+ D + + ++ V+DEAD +L GF+D++ + K+L S + Q +L
Sbjct: 214 LLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLL 273
Query: 751 LSATMPDDVLXVSR 792
SAT V ++R
Sbjct: 274 FSATQTTKVEDLAR 287
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 64.9 bits (151), Expect = 1e-11
Identities = 35/96 (36%), Positives = 57/96 (59%)
Frame = +2
Query: 212 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 391
++F D+ + L+ + A +P+ IQ+ I ++GR+ I A++G+GKTA F++ I+
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66
Query: 392 QQIDTSIRECQALILAPTRELAQQIQKVVIALG*SL 499
++ ALIL PTRELA QI + ALG +L
Sbjct: 67 EKWSKDPSGIFALILTPTRELAIQIDEQFAALGANL 102
Score = 48.8 bits (111), Expect = 1e-06
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Frame = +1
Query: 577 LVVGTPGRVYDMITRRALHA----NTIKLFVLDEADEMLSRGFKDQIHDVFKML--SADV 738
+VV TPGR+ D+I IK V+DEAD +LS F D + D F +L S D
Sbjct: 128 VVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDR 187
Query: 739 QVILLSATMPDDV 777
Q +L +AT+ D +
Sbjct: 188 QTLLFTATVTDAI 200
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 63.3 bits (147), Expect = 4e-11
Identities = 28/83 (33%), Positives = 47/83 (56%)
Frame = +1
Query: 577 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 756
+ + TPGR+ DM+ + + VLDEAD ML GF+ QI + + D Q ++ S
Sbjct: 248 ICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFS 307
Query: 757 ATMPDDVLXVSRCFMXDPVRLLV 825
AT P +V ++R ++ D +++ V
Sbjct: 308 ATWPKEVQRLARDYLNDYIQVTV 330
Score = 58.4 bits (135), Expect = 1e-09
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Frame = +2
Query: 209 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 388
V TF++ +L+ + GFE P+ IQQ+A + GRD++ + +G+GKT ++ +
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA 180
Query: 389 LQQIDTSIRECQ-----ALILAPTRELAQQIQKVVIALG*SLEC*MPCLH 523
+ I+ L+LAPTRELA QIQ+ G S C++
Sbjct: 181 IVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVY 230
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 62.5 bits (145), Expect = 7e-11
Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Frame = +2
Query: 209 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 388
V + +L E+L + GF KP IQ I G D+I +A +G+GKT F I I
Sbjct: 121 VSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPI 180
Query: 389 LQQI--DTSIRECQALILAPTRELAQQI 466
L+ + + QAL++APTRELA QI
Sbjct: 181 LEHCLRNVDAKYVQALVVAPTRELAHQI 208
Score = 38.7 bits (86), Expect = 0.001
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Frame = +1
Query: 577 LVVGTPGRVYDMITRRALHAN--TIKLFVLDEADEMLSRGFKDQIHDVFKMLSADV---- 738
+VV TPGR++ +I L N IK VLDEAD +L + +++ + ++L +
Sbjct: 245 VVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQR 304
Query: 739 QVILLSATMPD 771
Q + SAT +
Sbjct: 305 QTFIFSATFDE 315
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 61.7 bits (143), Expect = 1e-10
Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Frame = +1
Query: 577 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFK---MLSADV-QV 744
L+ TPGR+ D+I R + IK VLDEAD ML GF+ QI + + M S + Q
Sbjct: 308 LLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQT 367
Query: 745 ILLSATMPDDVLXVSRCFMXDPVRLLVXK 831
++ SAT P D+ ++R F+ D V L V +
Sbjct: 368 LMFSATFPRDIQLLARDFLKDYVFLSVGR 396
Score = 47.2 bits (107), Expect = 3e-06
Identities = 38/106 (35%), Positives = 51/106 (48%), Gaps = 18/106 (16%)
Frame = +2
Query: 209 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 388
V F L LL+ I G+ +P+ +Q+ +I GRD++A AQ+G+GKTA F I
Sbjct: 168 VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPI 227
Query: 389 L--------------QQIDTSIRECQA----LILAPTRELAQQIQK 472
L Q R +A LILAPTREL QI +
Sbjct: 228 LSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHE 273
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 60.5 bits (140), Expect = 3e-10
Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 8/100 (8%)
Frame = +2
Query: 194 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 373
D + +++ L E+L+ + +++PS+IQ+ AI +Q +D+I A++G+GKTA
Sbjct: 243 DLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAA 302
Query: 374 FSISILQQID--TSIRECQ------ALILAPTRELAQQIQ 469
F I ++ I + E A++LAPTRELAQQIQ
Sbjct: 303 FIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
Score = 49.6 bits (113), Expect = 6e-07
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 19/102 (18%)
Frame = +1
Query: 577 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKML---------- 726
+VV TPGR+ D + RR + V+DEAD ML GF+D ++ + L
Sbjct: 378 IVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDG 437
Query: 727 ---------SADVQVILLSATMPDDVLXVSRCFMXDPVRLLV 825
S+ Q I+ SAT+P V +++ ++ +PV L +
Sbjct: 438 SILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTI 479
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 60.5 bits (140), Expect = 3e-10
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 5/88 (5%)
Frame = +1
Query: 577 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFK-----MLSADVQ 741
+++GTPGR+ D+I ++ + + VLDEAD ML GF+ I ++ + Q
Sbjct: 288 VIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQ 347
Query: 742 VILLSATMPDDVLXVSRCFMXDPVRLLV 825
+ SAT P+ V ++ F+ DPV++ +
Sbjct: 348 TVFFSATWPESVRALAATFLKDPVKITI 375
Score = 50.0 bits (114), Expect = 4e-07
Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Frame = +2
Query: 218 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 397
FD++++ +L G+ Y ++P+ IQ + GRDV+ A++G+GKT F I LQ
Sbjct: 169 FDELDVSAKLREGLKNY--KEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQY 226
Query: 398 ID---TSIRECQALILAPTRELAQQ 463
++ + + L+++PTRELA Q
Sbjct: 227 LNGLSDNKSVPRVLVVSPTRELAIQ 251
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 57.6 bits (133), Expect = 2e-09
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
Frame = +2
Query: 194 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 373
D + V ++ L + + I + G+EKP++IQ +AI GRDVI A++G+GKT
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIA 471
Query: 374 FSISILQQI--DTSIRECQ---ALILAPTRELAQQI 466
F + + + I ++ + A+I+ PTRELA QI
Sbjct: 472 FLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQI 507
Score = 53.6 bits (123), Expect = 3e-08
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Frame = +1
Query: 577 LVVGTPGRVYDMITR---RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVI 747
+VV TPGR+ D+++ R + + VLDEAD M GF+ Q+ + + D Q +
Sbjct: 544 IVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTV 603
Query: 748 LLSATMPDDVLXVSRCFMXDPVRLLVXKR 834
L SAT P + ++R + PV + V R
Sbjct: 604 LFSATFPRAMEALARKVLKKPVEITVGGR 632
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 57.6 bits (133), Expect = 2e-09
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Frame = +2
Query: 215 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 394
+F +N+ + L + A GF+K + +Q AI ++ +D++ +A +G+GKT + +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 395 QI---DTSIRECQALILAPTRELAQQIQKV 475
++ DT ALI+APTRELA QI V
Sbjct: 62 KVTRRDTDETGLGALIVAPTRELATQIFNV 91
Score = 47.6 bits (108), Expect = 2e-06
Identities = 22/67 (32%), Positives = 40/67 (59%)
Frame = +1
Query: 577 LVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 756
+V+GTPGR+ +M++ + + +++ +LDEAD ++ GF+ + + L + L S
Sbjct: 135 VVIGTPGRLNEMLSH--ISSKHLEILILDEADTLIDMGFQRTLQSIISQLPKQRRTGLFS 192
Query: 757 ATMPDDV 777
ATM D V
Sbjct: 193 ATMNDTV 199
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 52.8 bits (121), Expect = 6e-08
Identities = 28/100 (28%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Frame = +2
Query: 203 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 382
+ V+ F ++ L + + F + IQ++ I ++GRD++ A++G+GKT F +
Sbjct: 36 ETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIV 95
Query: 383 SILQQID----TSIRECQALILAPTRELAQQIQKVVIALG 490
+++ + TS+ AL+++PTRELA Q + ++ +G
Sbjct: 96 PLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIG 135
Score = 43.6 bits (98), Expect = 4e-05
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +1
Query: 577 LVVGTPGRVYDMITRRA-LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 753
++V TPGR+ I + + +++ +LDEAD +L GF+ + + L Q +L
Sbjct: 163 ILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLF 222
Query: 754 SATMPDDVLXVSRCFMXDP 810
SAT V ++R + +P
Sbjct: 223 SATQTKSVKDLARLSLQNP 241
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 49.6 bits (113), Expect = 6e-07
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Frame = +1
Query: 562 RVVFMLVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI-HDVFKMLSADV 738
R + + +GTP R+ I + L ++ FV+DEAD + GF +Q H + S+++
Sbjct: 164 REKYDMCIGTPMRLVQAI-QTGLSFEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNI 222
Query: 739 QVILLSATMPDDVLXVSRCFMXDPVRLLV 825
L SAT+P V +++ DP+R++V
Sbjct: 223 CKSLFSATIPSRVEELAKVVTVDPIRIIV 251
Score = 45.6 bits (103), Expect = 9e-06
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Frame = +2
Query: 239 EELLRGIYAYGFEKPSAIQ----QRAIMPCIQG-RDVIAQAQSGTGKTATFSISILQQID 403
EE GI +K + + QR +P I RD++A A +G+GKT + ILQ++
Sbjct: 50 EEFPEGILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQ 109
Query: 404 TSI-RECQALILAPTRELAQQIQK 472
+ +A+I+APTREL +QI +
Sbjct: 110 LHVPGGYRAIIVAPTRELCEQIYR 133
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 46.4 bits (105), Expect = 5e-06
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = +1
Query: 577 LVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFK-MLSADVQVIL 750
L++ TPGR+ D + R L + + F+LDEAD ++ GF + I ++ + + + + +
Sbjct: 166 LLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLC 225
Query: 751 LSATMPDDVLXVSRCFMXDPVRLL 822
SATMP V V R + +L+
Sbjct: 226 FSATMPPKVSNVFRGILGTDFKLI 249
Score = 43.2 bits (97), Expect = 5e-05
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Frame = +2
Query: 269 GFEKPSAIQQRAIMPCIQGRD-VIAQAQSGTGKTATFSISILQQI-----DTSIRECQAL 430
GFEK + +QQR + + + QA++GTGKT F + + + + + ++
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 431 ILAPTRELAQQI 466
IL+PTRELA QI
Sbjct: 117 ILSPTRELALQI 128
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 43.6 bits (98), Expect = 4e-05
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Frame = +1
Query: 577 LVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILL 753
+++GTPGR+ D + AL + ++ VLDE D ++ GF++ + + L + +I
Sbjct: 272 ILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKK 331
Query: 754 SATMPD-DVLXVSRCFMXDPVRLL 822
++P V + M D V+ L
Sbjct: 332 DLSIPSRKVTMLCSATMKDTVKRL 355
Score = 42.7 bits (96), Expect = 6e-05
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Frame = +2
Query: 281 PSAIQQRAIMPCIQ--GRDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALI 433
P+AIQ + + +D +AQ+G+GKT + + I+Q++ T A+I
Sbjct: 162 PTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVI 221
Query: 434 LAPTRELAQQIQKVVIALG*SLEC*MPCLHWWHQC 538
+APTREL QQI V L + P HW C
Sbjct: 222 MAPTRELCQQIYNVANKLNNN-----PLSHWIVSC 251
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 40.7 bits (91), Expect = 3e-04
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +2
Query: 236 KEELLRGIYAYGFEKPSAIQQRAIMPCIQ-GRDVIAQAQSGTGKTATFSISILQQID-TS 409
K+ + RG P +Q P G DV A +G+GKT ++ I I+Q + +
Sbjct: 143 KQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRT 202
Query: 410 IRECQALILAPTRELAQQIQK 472
+ + +++ PTREL Q+ K
Sbjct: 203 VPRLRCVVIVPTRELTVQVAK 223
Score = 35.5 bits (78), Expect = 0.010
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +1
Query: 577 LVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLS 729
++V TPGR+ D I + ++ V+DEAD +L + F+D + V +S
Sbjct: 263 VLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEIS 314
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 37.5 bits (83), Expect = 0.002
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +2
Query: 233 LKEELLRGIY-AYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTS 409
L +EL+ +Y + EK Q AI G VI + +GK+ + I ILQ +
Sbjct: 295 LSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LE 353
Query: 410 IRECQALILAPTRELAQQIQKVVI 481
+ A + PT+ LAQ +K +I
Sbjct: 354 DNQSTAFFVFPTKSLAQDQKKSLI 377
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 29.5 bits (63), Expect = 0.64
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 185 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRD 331
LDT+W V + NL+ + + I + F PS I + MP + R+
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLNDRN 232
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.3 bits (60), Expect = 1.5
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Frame = -3
Query: 779 NTSSGMVAESNMT*TSADNILKTSWIWS--LKPLDNI--SSASSRTKSLMVLA*SARRVI 612
NT+SG+ S T +S +I+ TS S + SSAS+ + V S
Sbjct: 657 NTTSGLPTSSASTPSSNSSIVPTSTFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSS 716
Query: 611 ISYTRPGVPTTNMNTTLQLANIFTDIGATNASMAFSIQVITQELSPPSEF 462
T G+PT++++T L ++ + G++ S S +T + P F
Sbjct: 717 GFNTTSGLPTSSVSTPLSNSSAYPSSGSSTFSRLSS--TLTSSIIPTETF 764
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 182 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 274
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -3
Query: 587 PTTNMNTTLQLANIFTDIGATNASMAFSIQVITQELSPPSEFVGPALLWEP 435
PTT++NTT A T + +T + + V T + PP+ V + P
Sbjct: 98 PTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNTTTVVPPTTHVNTTTVVPP 148
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +2
Query: 353 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 469
G G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 385 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSS 486
D+ TNR + SSFD S P+N++G ++
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNT 520
>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 537
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 624 TTSYHIIYTTWSAHHQHEHHSPVGEYLHGHW 532
T + I W A+ SP+GE L+ HW
Sbjct: 211 TVGFGISLFVWGANAGASIGSPIGEALYDHW 241
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 159 DLREWTLGHLTPT 197
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 598 RVYDMITRRALHANTIKLFVLDEADEM 678
++ + + R + A+T K+ +LDEAD M
Sbjct: 106 QIKNFASTRQIFASTFKMIILDEADAM 132
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 670 DEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVL 780
+EMLS +H V+ S + + LS+T P+ +L
Sbjct: 299 EEMLSPSSLYTLHQVYTATSESINIKTLSSTTPEYIL 335
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 5.9
Identities = 22/103 (21%), Positives = 46/103 (44%)
Frame = +1
Query: 463 NSEGGDSSWVIT*MLNAMLALVAPMSVKIFANWRVVFMLVVGTPGRVYDMITRRALHANT 642
N G + W++T + + V+ +++ +F N F LVVG P + +
Sbjct: 415 NYAGVTAGWLLTFLGIILTPEVSAVTLCLFWNKMTRFSLVVGAPFGTITGVVCWLASTYS 474
Query: 643 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPD 771
++++ M S+ + ++ M S+ + ++LLS PD
Sbjct: 475 FCDGIVNKDTVMTSKAC--FVGNIVSMASSPLYIVLLSYIWPD 515
>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 505 LNAMLALVAPMSVKIFANWRVVFMLVVGT 591
L AML L + ++ W VVFM V+ T
Sbjct: 122 LQAMLILTIKLGIRRHVEWPVVFMGVLAT 150
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 677 ISSASSRTKSLMVLA*SARRVIISYTRPGVPTTNMNT 567
I S+ S ++ + A V +Y RP P T+MNT
Sbjct: 478 IGSSGSAQLAIFFILEVANVVAYAYVRPHFPQTSMNT 514
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 179 QGPFPEVHRNYLDPSMAHFWNPLANL 102
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,549,646
Number of Sequences: 5004
Number of extensions: 79460
Number of successful extensions: 308
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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