Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_D24
(930 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176... 141 6e-34
02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82... 137 1e-32
06_03_1479 + 30428488-30428502,30428619-30428715,30429627-304299... 137 1e-32
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254... 31 1.7
07_03_0845 - 21979581-21981281 29 4.0
02_03_0141 - 15649188-15649274,15649376-15649421,15650476-156506... 29 4.0
04_03_0554 - 17075142-17075159,17075788-17076591,17076619-170767... 28 9.2
>03_01_0223 -
1766292-1766442,1767621-1767676,1767798-1767891,
1768004-1768071,1768441-1769585,1770072-1770168,
1770265-1770279
Length = 541
Score = 141 bits (342), Expect = 6e-34
Identities = 63/107 (58%), Positives = 82/107 (76%)
Frame = +1
Query: 253 TVGKNGPALLQDVNFLDEMSSFDRDRIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFES 432
TVG GP LL+D + ++++++FDR+RIPERVVHA+GA A G+FEVTHDIT + A +
Sbjct: 33 TVGSRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDITHLTCADFLRA 92
Query: 433 IGKRTPIAVRFSTVGGESGSADTVRDPXGFAVKFYTDDGVWDLXGNN 573
G +TP+ VRFSTV E GS +T+RDP GFA+KFYT +G WDL GNN
Sbjct: 93 PGVQTPVIVRFSTVIHERGSPETLRDPRGFAIKFYTREGNWDLVGNN 139
>02_01_0111 -
825369-825428,825778-826380,826467-827267,827716-827766
Length = 504
Score = 137 bits (332), Expect = 1e-32
Identities = 62/107 (57%), Positives = 79/107 (73%)
Frame = +1
Query: 253 TVGKNGPALLQDVNFLDEMSSFDRDRIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFES 432
TVG GP LL+D + +++++ F R+RIPERVVHA+GA A G+FE THD+T + A S
Sbjct: 45 TVGPRGPILLEDYHLIEKVAHFARERIPERVVHARGASAKGFFECTHDVTDITCADFLRS 104
Query: 433 IGKRTPIAVRFSTVGGESGSADTVRDPXGFAVKFYTDDGVWDLXGNN 573
G +TP+ VRFSTV E GS +T+RDP GFAVKFYT +G WDL GNN
Sbjct: 105 PGAQTPVIVRFSTVIHERGSPETIRDPRGFAVKFYTREGNWDLLGNN 151
>06_03_1479 +
30428488-30428502,30428619-30428715,30429627-30429904,
30430256-30431032,30431254-30431343,30431538-30431605,
30431696-30431789,30431902-30431961
Length = 492
Score = 137 bits (331), Expect = 1e-32
Identities = 62/107 (57%), Positives = 82/107 (76%)
Frame = +1
Query: 253 TVGKNGPALLQDVNFLDEMSSFDRDRIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFES 432
TVG+ GP LL+D + +++++ FDR+RIPERVVHA+GA A G+FEVTHDI+ + A +
Sbjct: 33 TVGERGPILLEDYHLIEKLAQFDRERIPERVVHARGASAKGFFEVTHDISHLTCADFLRA 92
Query: 433 IGKRTPIAVRFSTVGGESGSADTVRDPXGFAVKFYTDDGVWDLXGNN 573
G +TP+ VRFSTV E GS +T+RDP GFAVKFYT +G +DL GNN
Sbjct: 93 PGVQTPVIVRFSTVVHERGSPETLRDPRGFAVKFYTREGNFDLVGNN 139
Score = 29.9 bits (64), Expect = 3.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 201 FITTKSGAPVWNQNGDTNGGQEWSSLI 281
F TT SGAPVWN N G+ L+
Sbjct: 16 FWTTNSGAPVWNNNSALTVGERGPILL 42
>06_03_0970 +
26424209-26424910,26425053-26425109,26425251-26425478,
26425788-26425881,26425955-26426161,26426581-26426711,
26426943-26426992,26427125-26427432,26427548-26427651,
26427810-26428526,26429159-26429338,26429703-26429831
Length = 968
Score = 30.7 bits (66), Expect = 1.7
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 247 IQTVGKNGPALLQDVNFLDEMSSFDRDRIPERVVHAKGAGAFGYFEVTHDITKYSAAKVF 426
++ +GK+ AL +D NF + SS D +R+ E KG YF + + + A++
Sbjct: 32 MEKLGKDQDAL-EDANFQQKPSSVDLNRLMELANSEKGVSQMQYFVKHWEYKRANTARLL 90
Query: 427 -ESIG 438
E IG
Sbjct: 91 KEQIG 95
>07_03_0845 - 21979581-21981281
Length = 566
Score = 29.5 bits (63), Expect = 4.0
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +3
Query: 87 GIKQRTPHSKKGTYKMASRD-PATDQLINYKKTLKDSPGFITTKSGAPVWNQNGDTN 254
GI RT SKK +A+RD P T K +D + K G P W+ NG N
Sbjct: 69 GIWFRTT-SKKAVIWVANRDNPVTSATSPELKISEDGNLVLLNKFGEPKWSSNGTWN 124
>02_03_0141 -
15649188-15649274,15649376-15649421,15650476-15650606,
15652168-15652254,15652470-15652538,15652699-15652845,
15652923-15653003,15653122-15653223,15653392-15653429,
15653590-15653692,15653766-15653888,15654872-15654951,
15655356-15655504,15657794-15658010,15658379-15658448,
15659167-15659313,15659430-15659486,15663270-15663436,
15663479-15663569,15664044-15665081,15665580-15665695,
15666104-15667039,15667108-15667170,15667416-15667970,
15668293-15668305
Length = 1570
Score = 29.5 bits (63), Expect = 4.0
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -3
Query: 574 YYFQXNPTLHHQYRTLQQNLEGHEQYQQIHS 482
Y++ +PTL H+YR + +L +EQ QQ+ S
Sbjct: 363 YFYDDDPTLEHRYRRCRPDL--YEQDQQVVS 391
>04_03_0554 -
17075142-17075159,17075788-17076591,17076619-17076719,
17077095-17077751,17077827-17078768,17078837-17078896,
17079131-17079763,17079886-17079942,17080177-17080702
Length = 1265
Score = 28.3 bits (60), Expect = 9.2
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -3
Query: 574 YYFQXNPTLHHQYRTLQQNLEGHEQYQQI 488
Y++ +P+L H+YR +Q L +EQ Q++
Sbjct: 580 YFYDDDPSLEHRYRRCRQEL--YEQDQEV 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,264,373
Number of Sequences: 37544
Number of extensions: 432030
Number of successful extensions: 943
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2659245980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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