Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP14_F_D22
(850 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.013
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.068
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.16
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.48
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.63
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 28 1.5
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 2.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.5
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 3.4
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 7.8
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 7.8
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.1 bits (77), Expect = 0.013
Identities = 32/109 (29%), Positives = 32/109 (29%), Gaps = 3/109 (2%)
Frame = +3
Query: 525 PPPPXXXPPPPXPLXXXXPXXXXXPPPPPXXRXXXXPXXXXXXPPPXXXPPXXXXXXXXX 704
PP PPPP P P PPP R P P P PP
Sbjct: 354 PPQGRSAPPPPPP--RSAPSTGRQPPPLSSSRAVSNP------PAP---PPAIPGRSAPA 402
Query: 705 XPXLXXXPXXXXPP---PXXLXPXXPVXAPXPXXPSXPXPPRPXXXLPP 842
P L PP P L P P P PS P LPP
Sbjct: 403 LPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
Score = 29.1 bits (62), Expect = 0.83
Identities = 30/114 (26%), Positives = 31/114 (27%), Gaps = 8/114 (7%)
Frame = +3
Query: 525 PPPPXXXPPPPXPLXXXXPXXXXXPPPPPXXR----XXXXPXXXXXXPPPXXXPPXXXXX 692
PPPP P+ PPPPP P PPP PP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP--PPPRSAPS 371
Query: 693 XXXXXPXLXXXPXXXXPP-PXXLXP--XXPVXAPXPXXPSXPXPPRP-XXXLPP 842
P L PP P P P P PP P LPP
Sbjct: 372 TGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPP 425
Score = 27.5 bits (58), Expect = 2.5
Identities = 27/115 (23%), Positives = 28/115 (24%), Gaps = 9/115 (7%)
Frame = +3
Query: 525 PPPPXXXP-----PPPXPLXXXXPXXXXXPPPPPXXRXXXXPXXXXXX---PPPXXXPPX 680
PPPP P PPP PP P P PP PP
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPS 422
Query: 681 XXXXXXXXXPXLXXXPXXXXPPPXX-LXPXXPVXAPXPXXPSXPXPPRPXXXLPP 842
P P L P P+ P P P P PP
Sbjct: 423 LPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +1
Query: 529 PPPXXXXXPXXPXXXXPPXXRXXPPLXXXXXXXXPXXXXXXXPPPXPPP 675
PP P P PP PPL P PPP P P
Sbjct: 436 PPSLPMGAPAAPPL--PPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
Score = 26.2 bits (55), Expect = 5.9
Identities = 22/100 (22%), Positives = 23/100 (23%)
Frame = +3
Query: 525 PPPPXXXPPPPXPLXXXXPXXXXXPPPPPXXRXXXXPXXXXXXPPPXXXPPXXXXXXXXX 704
PP P P + P PPP R PP PP
Sbjct: 267 PPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPP 326
Query: 705 XPXLXXXPXXXXPPPXXLXPXXPVXAPXPXXPSXPXPPRP 824
PPP P S P PP P
Sbjct: 327 IGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.7 bits (71), Expect = 0.068
Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Frame = +3
Query: 525 PPPPXXXPPP-PXPLXXXXPXXXXXPPPPPXXRXXXXPXXXXXXPPPXXXPP 677
PPP P P P P+ P PPPP P PPP PP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPP----PPPPGVAGAGPPPPPPPP 782
Score = 30.7 bits (66), Expect = 0.27
Identities = 15/51 (29%), Positives = 16/51 (31%)
Frame = +1
Query: 526 PPPPXXXXXPXXPXXXXPPXXRXXPPLXXXXXXXXPXXXXXXXPPPXPPPP 678
PPPP P P P + P PPP PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +3
Query: 741 PPPXXLXPXXPVXAPXPXXPSXPXPPRPXXXLPP 842
PPP + P P AP P P P P PP
Sbjct: 735 PPPAVIVPT-PAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 26.2 bits (55), Expect = 5.9
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Frame = +1
Query: 526 PPPPXXXXXPXX---PXXXXPPXXRXXPPLXXXXXXXXPXXXXXXXPPPXPPPP 678
PPPP P P PP P P PPP PPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGP---PPPPPPPGVAGAGPPPPPPPPP 783
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.5 bits (68), Expect = 0.16
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 531 PPXXXPPPPXPLXXXXPXXXXXPPPP 608
PP PPPP P P PPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 31.5 bits (68), Expect = 0.16
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 534 PXXXPPPPXPLXXXXPXXXXXPPPPP 611
P PPPP P P PPPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.9 bits (64), Expect = 0.48
Identities = 28/114 (24%), Positives = 30/114 (26%), Gaps = 8/114 (7%)
Frame = +3
Query: 525 PPPPXXXPPPPXPLXXXXPXXXXXPPPPPXXRXXXXPXXXXXXP-------PPXXXPPXX 683
PP P PP P P P P P P PP P
Sbjct: 1041 PPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVA 1100
Query: 684 XXXXXXXXPXLXXXPXXXXPPPXXLXPXXPVXAPXPXXPSXPXP-PRPXXXLPP 842
+ P PP P V AP PS P P+P PP
Sbjct: 1101 APPVPKPSVAVPPVPAPSGAPP---VPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151
Score = 26.6 bits (56), Expect = 4.4
Identities = 21/98 (21%), Positives = 23/98 (23%), Gaps = 1/98 (1%)
Frame = +3
Query: 525 PPPPXXXPPPPXPLXXXX-PXXXXXPPPPPXXRXXXXPXXXXXXPPPXXXPPXXXXXXXX 701
P P PP P P P PP P P P PP
Sbjct: 1143 PKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPK 1202
Query: 702 XXPXLXXXPXXXXPPPXXLXPXXPVXAPXPXXPSXPXP 815
+ P PP P P + P P
Sbjct: 1203 PSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240
Score = 25.8 bits (54), Expect = 7.8
Identities = 28/115 (24%), Positives = 30/115 (26%), Gaps = 9/115 (7%)
Frame = +3
Query: 525 PPPPXXXPPPPXPLXXXXP-XXXXXPPPPPXXRXXXXPXXXXXXPPPXXXP----PXXXX 689
P P PP P P P PP P P PP P P
Sbjct: 1115 PAPSGA-PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPA 1173
Query: 690 XXXXXXPXLXXXPXXXXPPPXXLXPXXPVXA----PXPXXPSXPXPPRPXXXLPP 842
P PP P P + P P + P P P LPP
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.5 bits (63), Expect = 0.63
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +3
Query: 525 PPPPXXXPPPPXPLXXXXPXXXXXPPPPP 611
PPPP PPP P P PPPP
Sbjct: 1707 PPPPPMSVPPP-PSAPPMPAGPPSAPPPP 1734
Score = 29.1 bits (62), Expect = 0.83
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Frame = +3
Query: 741 PPPXXLXPXXPVXAPXPXXP-SXPXPPRPXXXLP 839
PPP P P P P P S P PP P P
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +3
Query: 525 PPPPXXXPPPPXPLXXXXPXXXXXPPPP 608
PPP PPP P P PP P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +2
Query: 107 HVLLKTFKMKTIYFVLLISVCAVSAIYLPDDSNSADLDKYKSESF 241
H+ KT K + LL++ + Y+PD+S SA+ +++ +
Sbjct: 233 HMYYKTGKTDNNFHFLLVATLCLGYTYMPDESPSANYPYHEAYEY 277
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +3
Query: 528 PPPXXXPPPPXPLXXXXPXXXXXPPPPP 611
PPP PP P PPPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPP 194
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 2.5
Identities = 31/136 (22%), Positives = 32/136 (23%), Gaps = 2/136 (1%)
Frame = +3
Query: 423 PPXXXXPXXXTPXKLPXXRXXKXXSLXXXXXRXXPPPPXXXPPPP--XPLXXXXPXXXXX 596
PP P P S+ PP P PP P P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183
Query: 597 PPPPPXXRXXXXPXXXXXXPPPXXXPPXXXXXXXXXXPXLXXXPXXXXPPPXXLXPXXPV 776
PP P P PPP P P P P P P
Sbjct: 184 PPSAPSLPSAVPPMPPKVPPPPLSQAP---VANTSSRPSSFAPPAGHAPNVTSESPKFPN 240
Query: 777 XAPXPXXPSXPXPPRP 824
P PS PP P
Sbjct: 241 RG--PSIPSASVPPVP 254
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.1 bits (57), Expect = 3.4
Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Frame = -1
Query: 676 GGXXXG-GGXXXXXXGXXXXRXXGGGGGXXXXXGXXXXRGXGGGGXXXGGGG 524
GG G GG G R GGG G RG GG GG
Sbjct: 12 GGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGG 63
Score = 25.8 bits (54), Expect = 7.8
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = -1
Query: 676 GGXXXGGGXXXXXXGXXXXRXXGGGGGXXXXXGXXXXRGXGGGGXXXGGGG 524
G GG G R G GG G RG G GG G GG
Sbjct: 17 GRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARG-GRGGSSGGRGG 66
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 7.8
Identities = 28/98 (28%), Positives = 28/98 (28%)
Frame = -1
Query: 817 GGXGXXGXXGXGAXTGXXGXXXXGGGXXXXGXXXRXGXXXXXXXXXXGGXXXGGGXXXXX 638
GG G G G G G GG G G GG G G
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGG---FGGEGHHHGGH--------GGFGGGPGGFEGG 236
Query: 637 XGXXXXRXXGGGGGXXXXXGXXXXRGXGGGGXXXGGGG 524
G G GGG G G GGG GG G
Sbjct: 237 PGGFGGGPGGFGGGLGGFGGGPG--GFGGGPGGHGGPG 272
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 7.8
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = -1
Query: 841 GGRXXXGRGGXGXXGXXGXGAXTGXXGXXXXGGGXXXXGXXXR 713
GG GRGG G G G G G G G G G R
Sbjct: 446 GGGSRGGRGGFG--GRGGFGGRGGFGGGRGRGRGGARSGNPNR 486
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,811,310
Number of Sequences: 5004
Number of extensions: 29905
Number of successful extensions: 246
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -